PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

C2H2

Protein Properties

Length: 350aa MW: 39425.8 Da PI: 6.7202

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.19G142600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.5	0.0001	271	293	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ Glyma.19G142600.1.p 271 FMCRKCGKAFAVRGDWRTHEKNC 293 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	7.1E-6	187	206	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	9.64	187	214	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.58	187	209	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	189	209	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.65E-6	253	291	No hit	No description
Gene3D	G3DSA:3.30.160.60	9.2E-6	258	291	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	8.808	271	291	IPR007087	Zinc finger, C2H2
SMART	SM00355	49	271	291	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MADPYSNFFS SSSPFFRFNH NQYFPSSNPS PQHHRNFINH TKTNDTTPTF FHYHQTTTTF 60 SSLPPSPPLR EELPLLRLSP TKQEEEEEDL SNCTGAAMDV EERIHLKEEE DDEDGTTNVT 120 VALHIGLPSP SAAEMASVLS SSSEITDKDQ HGDGAAEDHS SAGGFRLNKG QYWIPTPSQI 180 LIGPTQFSCP VCCKTFNRYN NMQMHMWGHG SQYRKGPESL RGTQPTGMLR LPCYCCAPGC 240 RNNIDHPRAK PLKDFRTLQT HYKRKHGIKP FMCRKCGKAF AVRGDWRTHE KNCGKLWYCI 300 CGSDFKHKRS LKDHIKAFGS GHAAYGIDGF EEEDEPASEV EQDNDDSTQ*

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MADPYSNFFS SSSPFFRFNH NQYFPSSNPS PQHHRNFINH TKTNDTTPTF FHYHQTTTTF  60
SSLPPSPPLR EELPLLRLSP TKQEEEEEDL SNCTGAAMDV EERIHLKEEE DDEDGTTNVT  120
VALHIGLPSP SAAEMASVLS SSSEITDKDQ HGDGAAEDHS SAGGFRLNKG QYWIPTPSQI  180
LIGPTQFSCP VCCKTFNRYN NMQMHMWGHG SQYRKGPESL RGTQPTGMLR LPCYCCAPGC  240
RNNIDHPRAK PLKDFRTLQT HYKRKHGIKP FMCRKCGKAF AVRGDWRTHE KNCGKLWYCI  300
CGSDFKHKRS LKDHIKAFGS GHAAYGIDGF EEEDEPASEV EQDNDDSTQ*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in developing carpels (PubMed:17600712). Expressed in the shoot apical meristem and the replum (PubMed:25039392). {ECO:0000269\|PubMed:17600712}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.19G142600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT096462	0.0	BT096462.1 Soybean clone JCVI-FLGm-20D6 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003553422.1	0.0	zinc finger protein WIP2
Refseq	XP_028218722.1	0.0	zinc finger protein WIP2-like
Swissprot	Q9SVY1	1e-145	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A0B2R2U9	0.0	A0A0B2R2U9_GLYSO; Protein TRANSPARENT TESTA 1
TrEMBL	I1N935	0.0	I1N935_SOYBN; Uncharacterized protein
STRING	GLYMA19G32430.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF170	34	289
Representative plant	OGRP410	15	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-142	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Glyma.19G142600.1.p
Entrez Gene	100802907

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]