PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G047800.1.p
Common NameGLYMA_19G047800
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family G2-like
Protein Properties Length: 314aa    MW: 35282.9 Da    PI: 9.2832
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G047800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like68.21.3e-213082255
              G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                          r++W++eLH++Fv+av q+ G +kA Pk+ile+++++gLt e+v+SHLQ  Rl
  Glyma.19G047800.1.p 30 HRVVWSEELHQEFVNAVMQI-GLDKAEPKRILEVINIPGLTKENVASHLQIDRL 82
                         69******************.*****************************8775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-202882IPR009057Homeodomain-like
SuperFamilySSF466893.05E-122882IPR009057Homeodomain-like
TIGRFAMsTIGR015574.5E-203083IPR006447Myb domain, plants
PfamPF002491.7E-53178IPR001005SANT/Myb domain
PfamPF141082.4E-39169296IPR025461ABA DEFICIENT 4-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009688Biological Processabscisic acid biosynthetic process
GO:0010117Biological Processphotoprotection
GO:0016122Biological Processxanthophyll metabolic process
GO:0032928Biological Processregulation of superoxide anion generation
GO:0005634Cellular Componentnucleus
GO:0009517Cellular ComponentPSII associated light-harvesting complex II
GO:0009941Cellular Componentchloroplast envelope
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MSVPKKRSSN SKEFDFYESD DCYAPPAKEH RVVWSEELHQ EFVNAVMQIG LDKAEPKRIL  60
EVINIPGLTK ENVASHLQID RLGQTIKPCG TVEKGQKFSF PIRSNGGELE LCYQSQLNQR  120
SRVNLIRDWS FIGGSRIVVK PNFVRLVPFR KASRVYASWL SGSQLASSAF TLGTTAVLPF  180
YTLMVLAPNS ELTRKSMESS VPYVVLGILY AYLLYHSWTP ETVGLIFASK YLLPELTSIG  240
KMFSSEMTLA SAWIHLLVMD LFAARHVFLD GLENQIETRH SVSLCLFFCP IGVLSHAITK  300
EMTKSARKNK HSL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.208970.0cotyledon| hypocotyl| leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in root vasculature, root hairs, leaves, trichomes, sepals, stamens, stigma, pedicels, siliques and embryo. {ECO:0000269|PubMed:17470058}.
Functional Description ? help Back to Top
Source Description
UniProtRequired for neoxanthin biosynthesis, an intermediary step in abscisic acid (ABA) biosynthesis. Probably not involved directly in the enzymatic conversion of violaxanthin to neoxanthin. Cannot convert violaxanthin to neoxanthin in vitro. Required for ABA biosynthesis in response to drought stress (PubMed:17470058). Required for neoxanthin biosynthesis which is involved in photoprotection of photosystem II (PSII). Neoxanthin acts as an antioxidant within the photosystem PSII supercomplex (PubMed:17351115). {ECO:0000269|PubMed:17351115, ECO:0000269|PubMed:17470058}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G047800.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by heat stress. {ECO:0000269|PubMed:22525244}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0897470.0BT089747.1 Soybean clone JCVI-FLGm-2B18 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001356150.11e-174uncharacterized protein LOC100305914
RefseqXP_028216984.11e-174protein ABA DEFICIENT 4, chloroplastic-like isoform X1
SwissprotQ8LFP92e-87ABA4_ARATH; Protein ABA DEFICIENT 4, chloroplastic
TrEMBLA0A0R0EI260.0A0A0R0EI26_SOYBN; Uncharacterized protein
STRINGGLYMA19G06540.11e-173(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.14e-20response regulator 2
Publications ? help Back to Top
  1. Ferro M, et al.
    Proteomics of the chloroplast envelope membranes from Arabidopsis thaliana.
    Mol. Cell Proteomics, 2003. 2(5): p. 325-45
    [PMID:12766230]
  2. Champion A,Kreis M,Mockaitis K,Picaud A,Henry Y
    Arabidopsis kinome: after the casting.
    Funct. Integr. Genomics, 2004. 4(3): p. 163-87
    [PMID:14740254]
  3. Dall'Osto L,Cazzaniga S,North H,Marion-Poll A,Bassi R
    The Arabidopsis aba4-1 mutant reveals a specific function for neoxanthin in protection against photooxidative stress.
    Plant Cell, 2007. 19(3): p. 1048-64
    [PMID:17351115]
  4. North HM, et al.
    The Arabidopsis ABA-deficient mutant aba4 demonstrates that the major route for stress-induced ABA accumulation is via neoxanthin isomers.
    Plant J., 2007. 50(5): p. 810-24
    [PMID:17470058]
  5. Baron KN,Schroeder DF,Stasolla C
    Transcriptional response of abscisic acid (ABA) metabolism and transport to cold and heat stress applied at the reproductive stage of development in Arabidopsis thaliana.
    Plant Sci., 2012. 188-189: p. 48-59
    [PMID:22525244]
  6. Ma B, et al.
    Ethylene-induced inhibition of root growth requires abscisic acid function in rice (Oryza sativa L.) seedlings.
    PLoS Genet., 2014. 10(10): p. e1004701
    [PMID:25330236]
  7. Ware MA,Dall'Osto L,Ruban AV
    An In Vivo Quantitative Comparison of Photoprotection in Arabidopsis Xanthophyll Mutants.
    Front Plant Sci, 2016. 7: p. 841
    [PMID:27446097]