PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.18G206600.1.p | ||||||||
Common Name | DREB2D2, GLYMA_18G206600, Glyma18g43750, LOC100500303 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 528aa MW: 58439.1 Da PI: 6.1214 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.5 | 3.3e-18 | 74 | 131 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.....krkrfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr++ +g+WvAeIr+p + g k r +lg+f ta eAa a+++a+k+l+g Glyma.18G206600.1.p 74 CKFRGVRQRI-WGKWVAEIREPIN-GklvgeKANRLWLGTFSTALEAALAYDEAAKALYG 131 79*****998.**********855.55976666************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 8.5E-13 | 74 | 131 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.00E-28 | 74 | 138 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.9E-26 | 75 | 140 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.074 | 75 | 139 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-31 | 75 | 145 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.7E-17 | 75 | 141 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.5E-8 | 76 | 87 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-8 | 105 | 121 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 528 aa Download sequence Send to blast |
MKTNNNVSGE RKSRKRRNGG SDYVEDTLEK WKEYNRQQQL GSRENGVEVI HKAPAKGSRK 60 GCMRGKGGPQ NSDCKFRGVR QRIWGKWVAE IREPINGKLV GEKANRLWLG TFSTALEAAL 120 AYDEAAKALY GPCARLNFSE SIDSNGSSSS SGSDKKSPSG FSENGCDVAK AEELEVNRHR 180 CHEEKPRFSK VGVFEETEEK PILSGGCVAD DSIEELKEIT TGFEQCQTSE ECMATTLKNV 240 KSEVPGESEE MERELEEVVK NSGIGGEVNH LRKEPMDIAM NARGNYCSSP GSSDAATEHE 300 ILLKSEETRG ESVETLNSCE LSCSNHCLGF MHNNMLPDTN LRPNPEASIA KKHTEEVISE 360 ILGLCQGKCL KISHGQSPNE QFRRSEHFDE MKTRLKGLEC KLRAHSIHYK NQAPIVGDSN 420 HPSMQGIHLF GGGTVGPIES MSQVEALNNI NTNRNSLPGF SSGHGRKLCD LSQQLHKLGG 480 YLPEHWNSVQ FPDLEVGHDY SFLNPDYDFG LYEEQKLLDI CFPHVGS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-11 | 75 | 138 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.487 | 0.0 | somatic embryo |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.18G206600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX440389 | 0.0 | JX440389.1 Glycine max DRE-binding protein 2D;2 (DREB2D;2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001267497.1 | 0.0 | uncharacterized protein LOC100500303 | ||||
Refseq | XP_028213306.1 | 0.0 | uncharacterized protein LOC114395673 | ||||
TrEMBL | A0A445FVJ5 | 0.0 | A0A445FVJ5_GLYSO; Dehydration-responsive element-binding protein 2A | ||||
TrEMBL | K0H6H6 | 0.0 | K0H6H6_SOYBN; DRE-binding protein 2D2 | ||||
STRING | GLYMA18G43750.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13286 | 21 | 27 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40340.1 | 6e-29 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.18G206600.1.p |
Entrez Gene | 100500303 |
Publications ? help Back to Top | |||
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