PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.17G150800.2.p | ||||||||
Common Name | GLYMA_17G150800, LOC100816049 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | SRS | ||||||||
Protein Properties | Length: 370aa MW: 40935 Da PI: 5.765 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 28.1 | 6e-09 | 45 | 80 | 4 | 39 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathv 39 ++ +C++CGn a+ C +e C+ CC + C+ hv Glyma.17G150800.2.p 45 NKPKCKQCGNVARSRCPYECCKSCCSRNQNPCHIHV 80 5679*******************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 2.8E-6 | 48 | 81 | IPR007818 | Protein of unknown function DUF702 |
Sequence ? help Back to Top |
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Protein Sequence Length: 370 aa Download sequence Send to blast |
MATPNNNNNN PNIINNNNIA TAKPGTLGVG VGAVPTPPKS QRGHNKPKCK QCGNVARSRC 60 PYECCKSCCS RNQNPCHIHV LKANSTFPDK APSSGASPLD QQSLDPPQST AGRVASLRQL 120 SNSFAQFNNL HLSLRSKKPL TRKDAAAINE WRFAKIKEYK ERNVEVENEA FDRYMQNVDL 180 LEEVLAVKSL DENVPSALES NPTTMESNEA MIPGLKLQLR SNSMRSDGLR MRIQQIVDEG 240 LKKLKKSAVD GDINESIDDE SNKASERGKG IERLSAISDL MEKINKARTE EDLKPCLEMK 300 TQLFNLDEGA SVKDLQDNEM HENETVVTDV VPAEGLDYSL PKFVTTTEID LETLNTIDKH 360 FSTQDIEQL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.22828 | 0.0 | leaf| root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.17G150800.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006600881.1 | 0.0 | uncharacterized protein LOC100816049 isoform X2 | ||||
Refseq | XP_028208687.1 | 0.0 | uncharacterized protein LOC114391887 isoform X2 | ||||
TrEMBL | A0A445G746 | 0.0 | A0A445G746_GLYSO; Uncharacterized protein | ||||
TrEMBL | I1MVA7 | 0.0 | I1MVA7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA17G16100.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32730.1 | 6e-93 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.17G150800.2.p |
Entrez Gene | 100816049 |