PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.17G150800.1.p | ||||||||
Common Name | GLYMA_17G150800, LOC100816049 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | SRS | ||||||||
Protein Properties | Length: 371aa MW: 41022.1 Da PI: 5.765 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 27.9 | 6.7e-09 | 45 | 81 | 4 | 40 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvk 40 ++ +C++CGn a+ C +e C+ CC + C+ hv Glyma.17G150800.1.p 45 NKPKCKQCGNVARSRCPYECCKSCCSRNQNPCHIHVL 81 5679*******************************93 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 2.9E-6 | 48 | 81 | IPR007818 | Protein of unknown function DUF702 |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence Send to blast |
MATPNNNNNN PNIINNNNIA TAKPGTLGVG VGAVPTPPKS QRGHNKPKCK QCGNVARSRC 60 PYECCKSCCS RNQNPCHIHV LKANSTFPDK APSSGASPLD QQSLDPPQST SAGRVASLRQ 120 LSNSFAQFNN LHLSLRSKKP LTRKDAAAIN EWRFAKIKEY KERNVEVENE AFDRYMQNVD 180 LLEEVLAVKS LDENVPSALE SNPTTMESNE AMIPGLKLQL RSNSMRSDGL RMRIQQIVDE 240 GLKKLKKSAV DGDINESIDD ESNKASERGK GIERLSAISD LMEKINKART EEDLKPCLEM 300 KTQLFNLDEG ASVKDLQDNE MHENETVVTD VVPAEGLDYS LPKFVTTTEI DLETLNTIDK 360 HFSTQDIEQL * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.22828 | 0.0 | leaf| root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.17G150800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006600880.1 | 0.0 | uncharacterized protein LOC100816049 isoform X1 | ||||
Refseq | XP_028208686.1 | 0.0 | uncharacterized protein LOC114391887 isoform X1 | ||||
TrEMBL | A0A0R0FDP9 | 0.0 | A0A0R0FDP9_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA17G16100.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7690 | 16 | 18 | Representative plant | OGRP5972 | 5 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32730.1 | 3e-92 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.17G150800.1.p |
Entrez Gene | 100816049 |