PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G053700.1.p
Common NameGLYMA_17G053700, LOC100778060
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HSF
Protein Properties Length: 405aa    MW: 46386.1 Da    PI: 6.7262
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G053700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.56.9e-36741652102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Flkk++e++ed++++ ++sws++ +sfvv+d++ef+k++LpkyFkhsnf+SFvRQLn+YgF+kv++++         weF+++ F+ gkk
  Glyma.17G053700.1.p  74 FLKKTFEMVEDPHTNPIVSWSQTRHSFVVWDSHEFSKTLLPKYFKHSNFSSFVRQLNTYGFRKVDSDR---------WEFANEGFQGGKK 154
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          +ll++i+r+++
  Glyma.17G053700.1.p 155 HLLKNIRRRSK 165
                          ********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.7E-5870163IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.08E-3470163IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.3E-3870163IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.2E-187497IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.0E-3174163IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-18112124IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340113137IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-18125137IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MGGEEVARVK AELFDDNESD RNDDDVLSES KDSGVTTAHA VKEEMDDGAA NWSSSSSTSP  60
KPMEGLHEVG PPPFLKKTFE MVEDPHTNPI VSWSQTRHSF VVWDSHEFSK TLLPKYFKHS  120
NFSSFVRQLN TYGFRKVDSD RWEFANEGFQ GGKKHLLKNI RRRSKCNKLH QGAFNMMKPD  180
VDSEVEKLKK DQNILKVEIL KLRQQQENSH VQLTNVQERI RCAEMKQFQM MYFLTRMARR  240
PAFVEQLVHK IRRKREIDGN DMVKRPRLMG NPCHVPFPKT METTPNFDYR HQQGHKQFAT  300
LQSELNVTEV NSSRMEHPTP SPLEDELGNS LQGLRAHGCS RARAQDASSS AYHVMSEKLM  360
RENSIVDEEL DVNDSNIYLE LEDLITKPTD WSVGSASGLV EQTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d8k_B3e-23721683110Heat shock factor protein 2
5d8l_B3e-23721683110Heat shock factor protein 2
5d8l_D3e-23721683110Heat shock factor protein 2
5d8l_F3e-23721683110Heat shock factor protein 2
5d8l_H3e-23721683110Heat shock factor protein 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G053700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003549228.10.0heat stress transcription factor A-2
RefseqXP_028209405.10.0heat stress transcription factor A-2-like
TrEMBLA0A445G2W10.0A0A445G2W1_GLYSO; Heat stress transcription factor A-2 isoform A
TrEMBLK7MK250.0K7MK25_SOYBN; Uncharacterized protein
STRINGGLYMA17G06160.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106762938
Representative plantOGRP1180756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.14e-81heat shock transcription factor A2