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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Glyma.16G141300.1.p |
Common Name | GLYMA_16G141300, LOC100785004 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family |
GRAS |
Protein Properties |
Length: 541aa MW: 60263.1 Da PI: 6.2685 |
Description |
GRAS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Glyma.16G141300.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 291.7 | 2e-89 | 174 | 539 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89
+e L+++A++++s++++laqa+L+rl+++ +sp g+p++R+a++f+ AL++ la+s + ++ + +s + +++++ +k+fs +sP
Glyma.16G141300.1.p 174 IEELIRAADCFDSSHFQLAQAILERLNNRllRSPMGKPLHRAAFHFKDALQSILAGSNRTSSN----RLSSMAEIVQTIKTYKAFSGISP 259
679************************9889*************************4444443....333333499************** PP
GRAS 90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvpfe 177
i+ fs +t+Nqa+le ++g++ vH+iDf+i+ G+Q+++L++++a+++ + +p lRiT+v+++e + e + ++e+L++fA+ lg++ +
Glyma.16G141300.1.p 260 IPMFSVFTTNQALLETLNGSSFVHVIDFEIGLGIQYASLMKEIAEKAgaGASPLLRITAVVPEE--YAVESRLVRENLNQFAQDLGISAQ 347
**********************************************987889**********66..99999******************* PP
GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adh.nsesFlerflealeyy 264
+++ +++e++++++ r+ gE++aV l+ ++++ l +++ + ++L v+++sP vvv+v+ e ++ ++sF ++++++le+y
Glyma.16G141300.1.p 348 VDFVPLRTFETVSFKAVRFVDGEKIAVLLSPAIFSRLGSNGGSVG---AFLADVRRVSPGVVVFVDGEgwTEAaAAASFRRGVVSSLEFY 434
***9999*****************************966666666...9*******************543444677************* PP
GRAS 265 salfdsleaklpres..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve 352
s++++sl+a++++ e+ + +E +ll+++i +v ga+ ++ Wre++ +a ++pv+ls++a qa++ll+kv+ +g++v+
Glyma.16G141300.1.p 435 SMMLESLDASVAAGGggEWVRRIEMMLLRPKIFAAVE--GAR-----RRTPPWREAFYDAAMRPVQLSQFADYQAECLLAKVQIRGFHVD 517
**********9998888999************99885..555.....3479*************************************** PP
GRAS 353 eesgslvlgWkdrpLvsvSaWr 374
+++++lvl+W++r +v++SaWr
Glyma.16G141300.1.p 518 KRHAELVLCWHERVMVATSAWR 539
*********************8 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0030154 | Biological Process | cell differentiation |
GO:0048831 | Biological Process | regulation of shoot system development |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 541 aa
Download sequence Send
to blast |
MRVPSSPQPN NNHSPTSNLV LHTNNNPTTT FTYEPTSVLD LCRSPSPEKK LTVPKPEPQH 60 NNNNNNLNLD LDDHVLPNSD WWESIMKDLA LPEDSPTPLL KTNINPSCIP DFPPSSQDPP 120 FDHPQDFTSL SEIYNQNLPY NYPTNTLEHS FYDLSHNHHH NNNNNVNNNN WDFIEELIRA 180 ADCFDSSHFQ LAQAILERLN NRLLRSPMGK PLHRAAFHFK DALQSILAGS NRTSSNRLSS 240 MAEIVQTIKT YKAFSGISPI PMFSVFTTNQ ALLETLNGSS FVHVIDFEIG LGIQYASLMK 300 EIAEKAGAGA SPLLRITAVV PEEYAVESRL VRENLNQFAQ DLGISAQVDF VPLRTFETVS 360 FKAVRFVDGE KIAVLLSPAI FSRLGSNGGS VGAFLADVRR VSPGVVVFVD GEGWTEAAAA 420 ASFRRGVVSS LEFYSMMLES LDASVAAGGG GEWVRRIEMM LLRPKIFAAV EGARRRTPPW 480 REAFYDAAMR PVQLSQFADY QAECLLAKVQ IRGFHVDKRH AELVLCWHER VMVATSAWRC 540 *
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and flowers. {ECO:0000269|PubMed:18500650}. |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AB823552 | 0.0 | AB823552.1 Glycine max gene for gras family protein, complete cds, cultivar: Hayahikari. |