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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Glyma.16G105600.1.p |
Common Name | GLYMA_16G105600 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family |
MIKC_MADS |
Protein Properties |
Length: 133aa MW: 15449 Da PI: 9.6013 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Glyma.16G105600.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 42.2 | 1e-13 | 9 | 41 | 15 | 47 |
HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
SRF-TF 15 kRrngilKKAeELSvLCdaevaviifsstgkly 47
kR + KKA+EL vLCda+v++i+fsstgkl+
Glyma.16G105600.1.p 9 KRIENTTKKANELTVLCDAKVSIIMFSSTGKLH 41
7888888*************************8 PP
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2 | K-box | 56.9 | 9.1e-20 | 54 | 124 | 1 | 73 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnell 73
yq + g++ +++++e++q++l+kLk+ ++nL++e ++G++L++L +++L+ Le+ ++k+ k +R++K +l+
Glyma.16G105600.1.p 54 YQMTLGVDIWNSHYENMQENLKKLKEVNRNLRKE--FRIGDCLNELGMEDLRLLEEGMDKAAKVVRERKVRLI 124
67788899**************************..679******************************9987 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 133 aa
Download sequence Send
to blast |
MARGKIQIKR IENTTKKANE LTVLCDAKVS IIMFSSTGKL HKIEQSTKQF FDQYQMTLGV 60 DIWNSHYENM QENLKKLKEV NRNLRKEFRI GDCLNELGME DLRLLEEGMD KAAKVVRERK 120 VRLIICSSFC FT*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed during flower development in stamens and petals. {ECO:0000269|PubMed:17920788}. |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AY310303 | 6e-95 | AY310303.1 Glycine max MADS-box protein GmNMH7 (NMH7) mRNA, complete cds. |
GenBank | BT089362 | 6e-95 | BT089362.1 Soybean clone JCVI-FLGm-1D16 unknown mRNA. |