PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G261300.1.p
Common NameGLYMA_15G261300, LOC100799981
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-YC
Protein Properties Length: 269aa    MW: 30136.1 Da    PI: 6.7065
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G261300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC175.65.1e-55811851102
                NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd 87 
                          ql++fw++q   ie++ dfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa++r d
  Glyma.15G261300.1.p  81 QLQMFWSNQmqeIEQTIDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRND 170
                          89******988889**************************************************************************** PP

                NF-YC  88 ifdflvdivprdelk 102
                          +fdflvdi+prdelk
  Glyma.15G261300.1.p 171 VFDFLVDIIPRDELK 185
                          ************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.18E-3460175IPR009072Histone-fold
PfamPF008082.3E-21103166IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.103.1E-37104181IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MDKSEQTQQQ HQHGMGVATG ASQMAYSSHY PTAPMVASGT PAVAVPSPTQ APAAFSSSAH  60
QLAYQQAQHF HHQQQQHQQQ QLQMFWSNQM QEIEQTIDFK NHSLPLARIK KIMKADEDVR  120
MISAEAPVIF AKACEMFILE LTLRSWIHTE ENKRRTLQKN DIAAAISRND VFDFLVDIIP  180
RDELKEEGLG ITKATIPLVN SPADMPYYYV PPQHPVVGPP GMIMGKPVGA EQATLYSTQQ  240
PRPPMAFMPW PHTQPQQQQP PQHQQTDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B4e-5789181395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153159RRTLQKN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.565370.0cotyledon| meristem| pod| seed coat| somatic embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G261300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0992820.0BT099282.1 Soybean clone JCVI-FLGm-23D16 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001241541.10.0nuclear factor Y transcription factor
RefseqXP_006597042.10.0nuclear factor Y transcription factor isoform X1
RefseqXP_006597043.10.0nuclear factor Y transcription factor isoform X1
RefseqXP_006597044.10.0nuclear factor Y transcription factor isoform X1
RefseqXP_014622844.10.0nuclear factor Y transcription factor isoform X1
RefseqXP_028204210.10.0nuclear transcription factor Y subunit C-2-like isoform X1
RefseqXP_028204211.10.0nuclear transcription factor Y subunit C-2-like isoform X1
RefseqXP_028204212.10.0nuclear transcription factor Y subunit C-2-like isoform X1
RefseqXP_028204213.10.0nuclear transcription factor Y subunit C-2-like isoform X1
TrEMBLA0A445GYI30.0A0A445GYI3_GLYSO; Nuclear transcription factor Y subunit C-2 isoform A
TrEMBLC6TNG00.0C6TNG0_SOYBN; Uncharacterized protein
STRINGGLYMA15G41486.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123722836
Representative plantOGRP31517117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.28e-77nuclear factor Y, subunit C2