PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.15G125500.3.p | ||||||||
Common Name | GLYMA_15G125500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | FAR1 | ||||||||
Protein Properties | Length: 707aa MW: 81703.1 Da PI: 5.6393 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 73.6 | 4.3e-23 | 98 | 182 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++Yn+YAk++GF +r+++s ++++++e + ++C++eg++++++ + ++r+etrtgC a++++++ ++++w+v++++l+HnH++ Glyma.15G125500.3.p 98 NYYNTYAKDIGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTTKEAN-----SHRKETRTGCLAMIRLRLVDSNRWRVDEVKLDHNHSFD 182 69****************************************99888.....999********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.8E-20 | 98 | 182 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.1E-29 | 302 | 395 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.631 | 588 | 624 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 0.0011 | 599 | 626 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 707 aa Download sequence Send to blast |
MTDDAMCSPN DKDLSLSPNL DITIDDGSPN NEQLLEVEDE GNELENECGQ LFEIDGSEPE 60 NGRDETTIVD SHSGESQGKD CPPPVVRMEF DTYDDAYNYY NTYAKDIGFA IRVKSSWTKR 120 NSKEKRGAVL CCNCEGFKTT KEANSHRKET RTGCLAMIRL RLVDSNRWRV DEVKLDHNHS 180 FDPERAQNSK SHKRMDSRAK RKVEPTLDVE VRTIKLYRMP VVDASGYGSS NSTEGGTSNI 240 SCSRRLKLKK GDPELISNYF CRIQLMNPNF FYVMDLNDDG QLRNVFWIDS RSRAAYSYFG 300 DVVAFDSTCL SNNYEIPLVA FVGVNHHGKS VLLGCGLLAD ETFETYIWLF RAWLTCMTGR 360 PPQTIITNQC KAMQSAIAEV FPRAHHRICL SQIMQSILGC FVQFQEYEAF QMALTKVIYD 420 SKTVDEFERA WDDLTQHFGI RNHEKLQTLH EEREHWAPVY SKDTFFAGIS DYEKGESVIP 480 FFKGHVHQQT SLKEFFEIYE LVQQKKHKTE VLDDFESRDL SSLLKTRCYY ELQLSKLYTN 540 AVFRKFQDEV VMMSSCFSIT QTQTSGSIVT YMVKEREGEE PARDARNFEV MYDNAGAEVR 600 CICSCFNFKG YLCRHALYIL NYNCVEEIPC QYILSRWRRD FKRLYVPHLS ADNVDISNPV 660 QCFDHLYKRA MQVVEEGMIS QDHYMLSWQT FKESLNKIRL VADKIE* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.61943 | 0.0 | stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269|PubMed:15591448}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.15G125500.3.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025981560.1 | 0.0 | uncharacterized protein LOC100796448 | ||||
Refseq | XP_028204299.1 | 0.0 | uncharacterized protein LOC114388164 | ||||
Swissprot | Q9S793 | 0.0 | FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8 | ||||
TrEMBL | A0A445GSQ3 | 0.0 | A0A445GSQ3_GLYSO; Protein FAR1-RELATED SEQUENCE 8 isoform A | ||||
TrEMBL | I1MFY4 | 0.0 | I1MFY4_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA15G13160.2 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80010.1 | 0.0 | FAR1-related sequence 8 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.15G125500.3.p |
Publications ? help Back to Top | |||
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