PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

ERF

Protein Properties

Length: 244aa MW: 26848.3 Da PI: 7.8741

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.13G318500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	51.2	3.1e-16	76	126	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ ++Wv+e+r+p +k+ r++lg++ ++e+Aa+a++ a ++l+g Glyma.13G318500.1.p 76 PVYRGVRQRN-GNKWVCEVREP---NKKSRIWLGTYPSPEMAARAHDVAVLALKG 126 68***999.9**9998...347********************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	6.0E-12	76	126	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	7.85E-20	77	136	IPR016177	DNA-binding domain
PROSITE profile	PS51032	21.311	77	134	IPR001471	AP2/ERF domain
SMART	SM00380	1.7E-26	77	140	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.3E-28	77	136	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.0E-7	78	89	IPR001471	AP2/ERF domain
CDD	cd00018	2.65E-27	78	136	No hit	No description
PRINTS	PR00367	4.0E-7	100	116	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MDVTMKKVES ESPYYCSSSS PSSTSSESKL SSASPCNPNS PPDPSSWHAE TSKKVVVLIP 60 HKRKAGRKKF RETRHPVYRG VRQRNGNKWV CEVREPNKKS RIWLGTYPSP EMAARAHDVA 120 VLALKGTSAV FNFPDSVSLL PVANSSSAAD IRLAASKVSS VFGPSSSSSS RVETKPCLVD 180 GFVKTENNVD EVKTVFFDEE AFYNMPVFLD SMAEALLITP PSMKRAFDWD EVDCETDLTL 240 WTD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	2e-12	75	139	12	77	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Mostly expressed in developing seeds and apices. {ECO:0000269\|PubMed:17136305}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269\|PubMed:17136305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.13G318500.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By calcium ion, methyl-jasmonate (MeJA), cold, drought, and high salinity stress. {ECO:0000269\|PubMed:17136305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015040	1e-84	AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028186649.1	1e-177	dehydration-responsive element-binding protein 1F-like
Swissprot	A2WZI4	7e-54	DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F
Swissprot	Q8S9Z5	7e-54	DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F
TrEMBL	A0A0R0GWT9	1e-177	A0A0R0GWT9_SOYBN; Uncharacterized protein
STRING	GLYMA13G39540.1	1e-140	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF243	33	224
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25470.1	1e-51	C-repeat/DRE binding factor 2

Link Out ? help Back to Top
Phytozome	Glyma.13G318500.1.p

Publications ? help Back to Top
Wang Q, et al. Overexpression of a rice OsDREB1F gene increases salt, drought, and low temperature tolerance in both Arabidopsis and rice. Plant Mol. Biol., 2008. 67(6): p. 589-602 [PMID:18470484] Liu HH,Wang YG,Wang SP,Li HJ Cloning and characterization of peanut allene oxide cyclase gene involved in salt-stressed responses. Genet. Mol. Res., 2015. 14(1): p. 2331-40 [PMID:25867379]