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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.13G207700.1.p | ||||||||
Common Name | GLYMA_13G207700, LOC100808635 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NF-YC | ||||||||
Protein Properties | Length: 193aa MW: 21269.2 Da PI: 7.7262 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 126.2 | 1.2e-39 | 46 | 147 | 1 | 99 |
NF-YC 1 qlksfwekqiek...atdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd 87 ql+ fw++q+e+ +t+fk h+lPl+rikki+k+d+dvkmisae+Pv+++kace+fi elt+r+w ++e k + l + d+ +a+++t Glyma.13G207700.1.p 46 QLNDFWAAQREEakmTTNFKTHSLPLSRIKKIIKTDKDVKMISAETPVVFAKACEMFIKELTIRAWANTEARKGKILSQRDLVSAISQTA 135 7999*****66522279************************************************************************* PP NF-YC 88 ifdflvdivprd 99 fdfl di+p+d Glyma.13G207700.1.p 136 SFDFLDDIMPKD 147 **********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 3.19E-23 | 12 | 140 | IPR009072 | Histone-fold |
Pfam | PF00808 | 4.5E-17 | 68 | 131 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 9.0E-30 | 69 | 146 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MDQNKQGEAA EGGNIGHPAH GKNQEEQSNP MIAPTNPPKK KSLEEQLNDF WAAQREEAKM 60 TTNFKTHSLP LSRIKKIIKT DKDVKMISAE TPVVFAKACE MFIKELTIRA WANTEARKGK 120 ILSQRDLVSA ISQTASFDFL DDIMPKDAGL PRTSIASTEN AYLNMPPQQN VAGLPYDAPT 180 MAFPNLNHHA PN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 3e-34 | 54 | 146 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269|PubMed:26542958}. | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.13G207700.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269|PubMed:26542958}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003541628.1 | 1e-142 | nuclear transcription factor Y subunit C-3 | ||||
Refseq | XP_028187377.1 | 1e-142 | nuclear transcription factor Y subunit C-3-like | ||||
Swissprot | Q655V5 | 7e-39 | NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4 | ||||
Swissprot | Q8LCG7 | 3e-39 | NFYC2_ARATH; Nuclear transcription factor Y subunit C-2 | ||||
TrEMBL | A0A445I818 | 1e-141 | A0A445I818_GLYSO; Nuclear transcription factor Y subunit C-2 isoform A | ||||
TrEMBL | I1M135 | 1e-141 | I1M135_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G27790.1 | 1e-142 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF36140 | 2 | 2 | Representative plant | OGRP315 | 17 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 9e-32 | nuclear factor Y, subunit C2 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.13G207700.1.p |
Entrez Gene | 100808635 |