![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.13G207600.3.p | ||||||||
Common Name | GLYMA_13G207600, LOC100807580 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | NF-YC | ||||||||
Protein Properties | Length: 268aa MW: 29991.8 Da PI: 5.2879 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 141 | 2.9e-44 | 78 | 178 | 1 | 98 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd 87 ql++fw+kq i++atd++ h+lPlarikki+k+dedvk +saeaPv+++kace+fi+eltlr+w + ee +r+ +kk dia++++r+d Glyma.13G207600.3.p 78 QLNNFWAKQcqeIQEATDLRTHSLPLARIKKIMKSDEDVKLVSAEAPVVFAKACEMFIMELTLRAWANVEEDQRKIIKKHDIASSISRAD 167 799*****98889999************************************************************************** PP NF-YC 88 ifdflvdivpr 98 +fdfl+d+vpr Glyma.13G207600.3.p 168 VFDFLIDTVPR 178 *********98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 4.53E-26 | 70 | 172 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.3E-20 | 100 | 162 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 4.5E-32 | 101 | 178 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 268 aa Download sequence Send to blast |
MQVHVYNNNA KMDQNQHVQP AQEAYGENQY QSNPVTTPTV LPTQTSDSSL SSSYPRQHPN 60 DPQLEAMYEL RQERLQQQLN NFWAKQCQEI QEATDLRTHS LPLARIKKIM KSDEDVKLVS 120 AEAPVVFAKA CEMFIMELTL RAWANVEEDQ RKIIKKHDIA SSISRADVFD FLIDTVPRPL 180 ENILDQQGFV GLPTSTVPTP LNDACYHNPP PQALVPGNPY GSPRIAVGMP ILDQNHPGLQ 240 IHHFLTPMEP TPTPTPNPQN PSPSSDC* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 2e-42 | 86 | 178 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.13G207600.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_014621201.1 | 0.0 | nuclear transcription factor Y subunit C-2 isoform X1 | ||||
Refseq | XP_028187073.1 | 0.0 | nuclear transcription factor Y subunit C-2-like isoform X1 | ||||
TrEMBL | A0A445I7N1 | 0.0 | A0A445I7N1_GLYSO; Nuclear transcription factor Y subunit C-9 isoform B | ||||
TrEMBL | K7M0W9 | 0.0 | K7M0W9_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G27780.2 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G56170.2 | 9e-50 | nuclear factor Y, subunit C2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.13G207600.3.p |
Entrez Gene | 100807580 |