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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Glyma.13G093800.1.p |
Common Name | COL10, GLYMA_13G093800 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family |
CO-like |
Protein Properties |
Length: 366aa MW: 39873.8 Da PI: 6.655 |
Description |
CO-like family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Glyma.13G093800.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-B_box | 17.6 | 8e-06 | 20 | 61 | 3 | 38 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
++ C+ ++ + lfC+ ++ +lC C +++H H+
Glyma.13G093800.1.p 20 KKPCDSCKLASAALFCHLDSAFLCIACDSKIHCAnklasrHE 61
578******99********************95545666666 PP
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2 | zf-B_box | 28.6 | 2.9e-09 | 63 | 108 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
++C+ +e+ +++ C+ + lC +C + +H+ H++vp+
Glyma.13G093800.1.p 63 VWMCEVCEQAPASVTCKADAAALCVTCDSDIHSAnplaqrHERVPV 108
689*****************************66899999999986 PP
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3 | CCT | 69.7 | 7.2e-24 | 293 | 336 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44
Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++
Glyma.13G093800.1.p 293 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 336
9*****************************************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 366 aa
Download sequence Send
to blast |
MGIERGGLKG FRSGWSVPPK KPCDSCKLAS AALFCHLDSA FLCIACDSKI HCANKLASRH 60 ERVWMCEVCE QAPASVTCKA DAAALCVTCD SDIHSANPLA QRHERVPVEP FFDSAESIVK 120 ASATASFGFV VPSDDGAASD VFAPDDSDSA AWLIPNPNFG SKLMDAPEIK SKEIFFSEMD 180 PFLDFDYSNS FQNHNSAVND SVVPVQTKPS LAPPPINNHQ HHHQSETCFD IDFCRSKLSS 240 FNYPSQSLSQ SVSSSSLDVG VVPDGNTVSD MSYSSGIVVS GGQGATQLCG MDREARVLRY 300 REKRKNRKFE KTIRYASRKA YAETRPRIKG RFAKRTEIDS DVERLYSPGA AALMLDTPYG 360 VVPTF*
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Expression -- UniGene
? help Back to Top |
UniGene ID |
E-value |
Expressed in |
Gma.34441 | 0.0 | cotyledon| flower| hypocotyl| leaf| meristem| root| stem |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | GQ864264 | 0.0 | GQ864264.1 Glycine max CONSTANS-like zinc finger protein (COL10) mRNA, complete cds. |