PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

MIKC_MADS

Protein Properties

Length: 335aa MW: 38127.8 Da PI: 5.9593

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.13G086400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	86.4	1.6e-27	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien +nrqvtfskRrng++KKA+ELS+LCd+++avi+fs++g++ +s Glyma.13G086400.1.p 9 KRIENPTNRQVTFSKRRNGLIKKAYELSILCDIDIAVIMFSPSGRVNHFS 58 79********************************************9997 PP
2	K-box	22.3	5.4e-09	123	190	11	78
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqie 78 +++ e+lqqe++kL++++++ ++++R + + L+ ++ +L++ e+ L + l+++ ++K+ ll ++++ Glyma.13G086400.1.p 123 NSEIEELQQEVNKLQQQLQMTEEQIRLYEPDPLKMSTMADLENSEKYLVDVLTRVIQRKEYLLSNHLS 190 57899**********************************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	29.408	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.9E-38	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.57E-28	2	76	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.68E-35	2	75	No hit	No description
PRINTS	PR00404	3.1E-25	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.5E-26	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.1E-25	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.1E-25	38	59	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	2.4E-5	125	191	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MGRVKLEIKR IENPTNRQVT FSKRRNGLIK KAYELSILCD IDIAVIMFSP SGRVNHFSGR 60 RRIEDVFTRY INLPDQVRDN AVSFPELPYR RGIQNKEYLL RTLQQLRSEN DIALQLANPG 120 DINSEIEELQ QEVNKLQQQL QMTEEQIRLY EPDPLKMSTM ADLENSEKYL VDVLTRVIQR 180 KEYLLSNHLS SYDPSGIQGI PTSFENVGWL QDGNQNHTQI FDASAPLDPL RDLSSTVYGS 240 FSQGTSSNAN PRIMGECHVS NPSDGNLQAW PLGYTLYPHH HIQHGMVGPD MTDMMPNGQV 300 NIPITPSHVE QPKNESVEYD QSKQPPPHHQ LNAQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6bz1_A	6e-16	1	90	1	91	MEF2 CHIMERA
6bz1_B	6e-16	1	90	1	91	MEF2 CHIMERA
6bz1_C	6e-16	1	90	1	91	MEF2 CHIMERA
6bz1_D	6e-16	1	90	1	91	MEF2 CHIMERA
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269\|PubMed:12949148}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.13G086400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT089745	0.0	BT089745.1 Soybean clone JCVI-FLGm-14M9 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003543775.2	0.0	agamous-like MADS-box protein AGL104
Swissprot	Q9LM46	1e-116	AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBL	I1LW12	0.0	I1LW12_SOYBN; Uncharacterized protein
STRING	GLYMA13G02170.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8525	27	35
Representative plant	OGRP16	17	761

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22130.1	1e-108	AGAMOUS-like 104

Link Out ? help Back to Top
Phytozome	Glyma.13G086400.1.p
Entrez Gene	100800846

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]