PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.12G176400.5.p | ||||||||
Common Name | GLYMA_12G176400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | TALE | ||||||||
Protein Properties | Length: 683aa MW: 75105.9 Da PI: 8.5635 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.8 | 2.1e-09 | 598 | 635 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LA+++gL+ +qV++WF N R + Glyma.12G176400.5.p 598 FEHflHPYPTDTDKHMLASQTGLSRNQVSNWFINARVR 635 665559******************************87 PP | |||||||
2 | BELL | 97.1 | 1.4e-31 | 452 | 520 | 4 | 72 |
BELL 4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 + q kkakLl ++eeV ++ kqy+ q+q+v+ssFe vaglgsa+pY+ +Alk +S+hFrc k+ i+eq+ Glyma.12G176400.5.p 452 DYQHKKAKLLYMQEEVTRQCKQYHLQMQMVVSSFESVAGLGSATPYIPMALKSVSKHFRCFKNSISEQL 520 789****************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 2.7E-41 | 358 | 518 | IPR006563 | POX domain |
Pfam | PF07526 | 1.2E-39 | 363 | 517 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.001 | 576 | 639 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.0E-9 | 579 | 643 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.59E-11 | 579 | 640 | No hit | No description |
SuperFamily | SSF46689 | 5.56E-17 | 581 | 646 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.9E-27 | 582 | 643 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 3.0E-18 | 596 | 635 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 683 aa Download sequence Send to blast |
MSNLRPESHV AQQIRREKLR IQNSSQPSHE FPNNLEQLSL HPAGGFNNLD LLQVRSVRNA 60 NILDGLAVYS SEMPNFSTSS SNPNLSDARN ALEYHQEQGA AAEPSNRLMM NQYGSFPHSM 120 SAIHSSHKEH CELRNLGNWR NSAPHQGSDW FVNYASNANS FLSADLNNNV SAYNELMDVH 180 CSNASGEISG REIQKQLGVL HNNPPPSPLY QNALQDIVKS ASFSSHTRQD MSSLMQQNDH 240 SIWVGNAGEA EPQQPSYENQ PNQLHFGWTN RTIANTLSDS TPQSLSLSLS SNAQPKPSVS 300 HLEQGSASDD PQCLTNMKSI VKPSIVSRDI GKSVQETVGM PSKSTITYRS VGPLGPFTGY 360 ATILKSSRFL KSAQQLLDEI CCLSGAKFAK SYDVSKRVSP EVSASTSADT VTGVAAKGSN 420 SGSSSSILYS VSKENRADPG VRSSFGLSSR PDYQHKKAKL LYMQEEVTRQ CKQYHLQMQM 480 VVSSFESVAG LGSATPYIPM ALKSVSKHFR CFKNSISEQL KLISEALGED LSKPSNTSTC 540 SNKADTTTTK ARIRCSIDQS FLKNKSVKGT TELLEQHVWR PQRGLPERAV AILKAWLFEH 600 FLHPYPTDTD KHMLASQTGL SRNQVSNWFI NARVRVWKPM VEEIHTLETK ATSSKGNCGK 660 NEGTSSGTEG YGYGIIHYCC KC* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 2e-15 | 585 | 642 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 2e-15 | 585 | 642 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Gma.22503 | 9e-79 | hypocotyl |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.12G176400.5.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006592709.1 | 0.0 | BEL1-like homeodomain protein 4 | ||||
Refseq | XP_014620473.1 | 0.0 | BEL1-like homeodomain protein 4 | ||||
Refseq | XP_025980490.1 | 0.0 | BEL1-like homeodomain protein 4 | ||||
Refseq | XP_025980491.1 | 0.0 | BEL1-like homeodomain protein 4 | ||||
TrEMBL | A0A0R0H787 | 0.0 | A0A0R0H787_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA12G29991.3 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G27990.1 | 3e-76 | BEL1-like homeodomain 8 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.12G176400.5.p |