PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.12G118100.1.p | ||||||||
Common Name | GLYMA_03G111500, GLYMA_12G118100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 133aa MW: 15467.1 Da PI: 9.6013 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 42.2 | 1e-13 | 9 | 41 | 15 | 47 |
HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 15 kRrngilKKAeELSvLCdaevaviifsstgkly 47 kR + KKA+EL vLCda+v++i+fsstgkl+ Glyma.12G118100.1.p 9 KRIENTTKKANELTVLCDAKVSIIMFSSTGKLH 41 7888888*************************8 PP | |||||||
2 | K-box | 58.9 | 2.1e-20 | 54 | 124 | 1 | 73 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnell 73 yq + g++ +++++e++q++l+kLk+ ++nL++e ++G++L++L +++L+ Le+ ++k+ k +R++K +l+ Glyma.12G118100.1.p 54 YQMTLGVDIWNSHYENMQENLKKLKEVNRNLRKE--FRMGDCLNELGMEDLRLLEEGMDKAAKVVRERKVRLI 124 67788899*************************9..67*******************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 14.507 | 1 | 47 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.7E-15 | 1 | 46 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.62E-19 | 3 | 78 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.0E-11 | 9 | 41 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.2E-9 | 9 | 24 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.2E-9 | 24 | 45 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.4E-10 | 65 | 124 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 8.559 | 67 | 132 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 133 aa Download sequence Send to blast |
MARGKIQIKR IENTTKKANE LTVLCDAKVS IIMFSSTGKL HKIEQSTKQF FDQYQMTLGV 60 DIWNSHYENM QENLKKLKEV NRNLRKEFRM GDCLNELGME DLRLLEEGMD KAAKVVRERK 120 VRLIICSSFC FT* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.59389 | 1e-119 | flower |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed during flower development in stamens and petals. {ECO:0000269|PubMed:17920788}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.12G118100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY310303 | 2e-97 | AY310303.1 Glycine max MADS-box protein GmNMH7 (NMH7) mRNA, complete cds. | |||
GenBank | BT089362 | 2e-97 | BT089362.1 Soybean clone JCVI-FLGm-1D16 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025982666.1 | 2e-76 | floral homeotic protein PMADS 1-like | ||||
Swissprot | E0CPH4 | 6e-50 | AP3_VITVI; Agamous-like MADS-box protein AP3 | ||||
TrEMBL | I1LS77 | 3e-92 | I1LS77_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA03G26261.1 | 4e-93 | (Glycine max) | ||||
STRING | GLYMA12G13560.1 | 4e-93 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF22304 | 2 | 4 | Representative plant | OGRP5199 | 11 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54340.1 | 7e-41 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.12G118100.1.p |
Publications ? help Back to Top | |||
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