PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G057000.1.p
Common NameGLYMA_12G057000, LOC100802239
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 342aa    MW: 38460 Da    PI: 7.6474
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G057000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2156.9e-05185204120
                          EEETTTTEEESSHHHHHHHH CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                          ++Cp C k+F+r  n++ H+
  Glyma.12G057000.1.p 185 FPCPLCFKTFNRYNNMQMHM 204
                          89*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.0E-5185204IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.515185212IPR007087Zinc finger, C2H2
PROSITE patternPS000280187207IPR007087Zinc finger, C2H2
SuperFamilySSF576672.68E-5251289No hitNo description
Gene3DG3DSA:3.30.160.608.5E-5255289IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MTNSYTSNDL NFWLDLNSPC LLSSPSPSSI NPPFYFPSNY HNSNNYTSAI SSNTHHQFQP  60
SPPQRKALPL LHPRHEEEED LESSFSVMEV DKKKKELSSS SSFLDEEDAA VTVALHLGLP  120
STSIASSADL ASSSLYSTEA SSDKEEEEEK VVLTDASGLL LSNRINRGQY WIPTSSQILI  180
GPTQFPCPLC FKTFNRYNNM QMHMWGHGSQ YRKGPESLRG TQPTAMLRLP CYCCAPGCKN  240
NIDHPRAKPL KDFRTLQTHY KRKHGTKPFV CRKCCKAFAV RGDWRTHEKN CGKRWYCSCG  300
SDFKHKRSLK DHIKAFGYGH TACGNDCNLD QDDDQVGSEI E*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.284321e-161somatic embryo
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G057000.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150391e-159AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014620008.10.0zinc finger protein WIP2
RefseqXP_028194157.10.0zinc finger protein WIP2-like
SwissprotQ8W0311e-122ZWIP5_ARATH; Zinc finger protein WIP5
TrEMBLA0A445HL270.0A0A445HL27_GLYSO; Zinc finger protein WIP5
TrEMBLI1LQI80.0I1LQI8_SOYBN; Uncharacterized protein
STRINGGLYMA12G06080.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Representative plantOGRP4101597
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-112C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]