PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G132600.1.p
Common NameGLYMA_11G132600, LOC100783143
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 342aa    MW: 38510.1 Da    PI: 7.3078
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G132600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2156.9e-05182201120
                          EEETTTTEEESSHHHHHHHH CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                          ++Cp C k+F+r  n++ H+
  Glyma.11G132600.1.p 182 FPCPLCFKTFNRYNNMQMHM 201
                          89*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.515182209IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.0E-5182201IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280184204IPR007087Zinc finger, C2H2
SuperFamilySSF576672.72E-5248286No hitNo description
Gene3DG3DSA:3.30.160.608.5E-5252286IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MTNSYTSNDL NFWLDLNSPC LLSSPSPSPS INPPFYFPSN YHNNNYTSVI SSTRHQFQPS  60
PPPEGKALPL LHPRHEVEEE DLESSFSAME VDKKKKELSS SSSCLDEEDA AVTVALHLGL  120
PSTSDLASSS LYSSTEASSD KEEEEEEVVL TDSSGLLLSN RINRGQYWIP TSSQILIGPT  180
QFPCPLCFKT FNRYNNMQMH MWGHGSQYRK GPESLRGTQP TAMLRLPCYC CAPGCKNNID  240
HPRAKPLKDF RTLQTHYKRK HGTKPFVCRK CCKAFAVRGD WRTHEKNCGK RWYCSCGSDF  300
KHKRSLKDHI KAFGYGHTAC GNDRCNLDQD HDDQLVGSEI E*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.532761e-163root| somatic embryo
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G132600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0956331e-160BT095633.1 Soybean clone JCVI-FLGm-19L21 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003539062.10.0zinc finger protein WIP2
RefseqXP_028189190.10.0zinc finger protein WIP2-like
SwissprotQ8W0311e-119ZWIP5_ARATH; Zinc finger protein WIP5
TrEMBLA0A445I0Z60.0A0A445I0Z6_GLYSO; Zinc finger protein WIP5
TrEMBLI1LJV30.0I1LJV3_SOYBN; Uncharacterized protein
STRINGGLYMA11G14100.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Representative plantOGRP4101597
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-110C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]