PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

ERF

Protein Properties

Length: 277aa MW: 30986.9 Da PI: 6.309

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.11G036400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	65.8	8.5e-21	138	188	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp+++g r++lg+f+ta eAaka+++a+ +l+g Glyma.11G036400.1.p 138 HYRGVRQRP-WGKFAAEIRDPNKRG--SRVWLGTFDTAIEAAKAYDRAAFRLRG 188 8******.******96655..***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	1.2E-32	137	197	IPR001471	AP2/ERF domain
CDD	cd00018	2.60E-32	137	196	No hit	No description
Pfam	PF00847	1.1E-14	138	188	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	24.223	138	196	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.37E-22	138	197	IPR016177	DNA-binding domain
SMART	SM00380	1.0E-37	138	202	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.3E-13	139	150	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.3E-13	178	198	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009409	Biological Process	response to cold
GO:0010200	Biological Process	response to chitin
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MANALEVSAL NRIKLHLLGE LSPLTQFQEP NTTSLCSQSS TSDSFTTVDQ IFSEFLDFPT 60 TTTSSTEQNQ FSAFEFEPKP EIIEPQLEFS FPTTRCKSSR RPSLQISLPK KTEWIQFGEP 120 EVTETVSQSN PNAEEKKHYR GVRQRPWGKF AAEIRDPNKR GSRVWLGTFD TAIEAAKAYD 180 RAAFRLRGSK AILNFPLEAG ADDRKRQREE KVEPVLEVVK REKIGESDVS LIKNNPLTPS 240 SWLGFWGSDA NGIFTVPPLS PLSPHPALGF PQLMVV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	4e-31	137	197	1	61	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A	4e-31	137	203	4	70	ATERF1
3gcc_A	4e-31	137	203	4	70	ATERF1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.41651	0.0	flower\| hypocotyl\| leaf\| pod\| root\| seed coat

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269\|PubMed:10715325, ECO:0000269\|PubMed:9756931}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00549	DAP	Transfer from AT5G47230	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.11G036400.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269\|PubMed:10715325}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT095987	0.0	BT095987.1 Soybean clone JCVI-FLGm-15G18 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001304366.2	0.0	ethylene-responsive transcription factor 5-like protein
Refseq	XP_028186914.1	0.0	ethylene-responsive transcription factor 5-like
Swissprot	O80341	2e-64	EF102_ARATH; Ethylene-responsive transcription factor 5
TrEMBL	A0A445HWI8	0.0	A0A445HWI8_GLYSO; Ethylene-responsive transcription factor 5
TrEMBL	I1LGT2	0.0	I1LGT2_SOYBN; Uncharacterized protein
STRING	GLYMA11G03900.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1085	34	109
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47230.1	5e-53	ethylene responsive element binding factor 5

Link Out ? help Back to Top
Phytozome	Glyma.11G036400.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]