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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.10G197500.1.p |
| Common Name | GLYMA_10G197500, LOC100782028 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
NAC |
| Protein Properties |
Length: 466aa MW: 52044.4 Da PI: 7.3107 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.10G197500.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 171.3 | 3e-53 | 33 | 160 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88
l+pGfrFhPtdeelv +yLk+kv+gk++++ ++i+evdiy++ePwdL +++k++++ewyfFs dkky +g r nrat++gyWkatg+
Glyma.10G197500.1.p 33 LAPGFRFHPTDEELVIYYLKRKVSGKSFRF-DAISEVDIYRSEPWDLAdkSRLKTRDQEWYFFSALDKKYGNGGRMNRATSKGYWKATGN 121
579**************************9.99**************75348899999******************************** PP
NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
d++v + ++++vglkktLvf++grap+g++t+Wvmheyrl
Glyma.10G197500.1.p 122 DRPVRH-DQRTVGLKKTLVFHSGRAPDGKRTNWVMHEYRL 160
******.999****************************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 466 aa
Download sequence Send
to blast |
MGRETMCLPT PPTTATTTVN PVPPPAPAPP TSLAPGFRFH PTDEELVIYY LKRKVSGKSF 60
RFDAISEVDI YRSEPWDLAD KSRLKTRDQE WYFFSALDKK YGNGGRMNRA TSKGYWKATG 120
NDRPVRHDQR TVGLKKTLVF HSGRAPDGKR TNWVMHEYRL VEEELERAGS GSSQPQDAYV 180
LCRVFHKNNI GPPNGQRYAP FIEEEWDDAS GMVPGADPGD NRSFAHQPHV EGKSGVLCAE 240
GRNGALQDTQ SFNKAPFDVN KLPIETQNLL AVCKRESMAE YPSPEKDDNN CKHMDDYPSP 300
QTDNPKPFSQ IYKRRRHNLN SNNSHVSGDS IRTSQDPCSS TITTAATALP TTNAAAGTAT 360
NTAPKKHFLS ALVEFSLLES LESKDSLASI KTPDFDVENL ESSMPPSCAK FIKEMKSEMQ 420
KLSVEKETMR FEMMSTQAMI NILQSRVDVL SKENEDLKRM VAQNP*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 3swm_A | 5e-49 | 27 | 189 | 14 | 170 | NAC domain-containing protein 19 |
| 3swm_B | 5e-49 | 27 | 189 | 14 | 170 | NAC domain-containing protein 19 |
| 3swm_C | 5e-49 | 27 | 189 | 14 | 170 | NAC domain-containing protein 19 |
| 3swm_D | 5e-49 | 27 | 189 | 14 | 170 | NAC domain-containing protein 19 |
| 3swp_A | 5e-49 | 27 | 189 | 14 | 170 | NAC domain-containing protein 19 |
| 3swp_B | 5e-49 | 27 | 189 | 14 | 170 | NAC domain-containing protein 19 |
| 3swp_C | 5e-49 | 27 | 189 | 14 | 170 | NAC domain-containing protein 19 |
| 3swp_D | 5e-49 | 27 | 189 | 14 | 170 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Expression -- UniGene
? help Back to Top |
| UniGene ID |
E-value |
Expressed in |
| Gma.7381 | 0.0 | cotyledon| hypocotyl| leaf| meristem| seed coat |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Mostly expressed in floral organs, and, at low levels, in other organs. {ECO:0000269|PubMed:25578968}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC050 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). Regulates siRNA-dependent post-transcriptional gene silencing (PTGS) through SGS3 expression modulation (PubMed:28207953). Required during pollen development (PubMed:19237690). {ECO:0000269|PubMed:19237690, ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990, ECO:0000269|PubMed:28207953}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by type III effector proteins (TTEs) secreted by the pathogenic bacteria P.syringae pv. tomato DC3000 during basal defense. {ECO:0000269|PubMed:16553893}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
| Publications
? help Back to Top |
- Higgins JD,Ferdous M,Osman K,Franklin FC
The RecQ helicase AtRECQ4A is required to remove inter-chromosomal telomeric connections that arise during meiotic recombination in Arabidopsis.
Plant J., 2011. 65(3): p. 492-502
[PMID:21265901] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Zhang S, et al.
C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association.
Cell Discov, 2019.
[PMID:26617990] - Butel N,Le Masson I,Bouteiller N,Vaucheret H,Elmayan T
sgs1: a neomorphic nac52 allele impairing post-transcriptional gene silencing through SGS3 downregulation.
Plant J., 2017. 90(3): p. 505-519
[PMID:28207953] - Elmayan T, et al.
Arabidopsis mutants impaired in cosuppression.
Plant Cell, 1998. 10(10): p. 1747-58
[PMID:9761800]
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