PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

ERF

Protein Properties

Length: 168aa MW: 18822.5 Da PI: 8.8547

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.10G007000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	57.2	4.2e-18	45	96	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s ++GVr+++ +g+++AeIrd + + r++lg+f+ ae Aa a+++a+ +++g Glyma.10G007000.1.p 45 SSFRGVRRRP-WGKFAAEIRDSTR---HgVRVWLGTFDNAEAAALAYDQAAFSMRG 96 679*****.******422...25***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	2.57E-19	45	105	No hit	No description
SuperFamily	SSF54171	5.95E-22	45	106	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	1.4E-29	46	105	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.524	46	104	IPR001471	AP2/ERF domain
SMART	SM00380	1.5E-35	46	110	IPR001471	AP2/ERF domain
Pfam	PF00847	4.0E-13	46	96	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.7E-12	47	58	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.7E-12	86	106	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
MDSSSHQLLP FNENDPEDML LYGIITSCQE KKVTINQEQV NKKRSSFRGV RRRPWGKFAA 60 EIRDSTRHGV RVWLGTFDNA EAAALAYDQA AFSMRGSGAV LNFPVEKVKE SLRDMKLDGC 120 SPVVALKRRH SLAAKRKKED VLVFHDLGAD YLEHLLMCSD LPSTTIV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	2e-29	40	106	8	74	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.28365	0.0	cotyledon\| hypocotyl

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269\|PubMed:23057995, ECO:0000269\|PubMed:28733419}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.10G007000.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269\|PubMed:28733419}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT031084	0.0	KT031084.1 Glycine max clone HN_CCL_193 AP2-EREBP transcription factor (Glyma10g00980.1) mRNA, partial cds.
GenBank	KT031275	0.0	KT031275.1 Glycine max clone HN_CCL_98 AP2-EREBP transcription factor (Glyma10g00980.1) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003535804.1	1e-123	ethylene-responsive transcription factor 1B
Swissprot	A0A3Q7I5Y9	1e-61	ERFC3_SOLLC; Ethylene-response factor C3
TrEMBL	I1L7I1	1e-122	I1L7I1_SOYBN; AP2-EREBP transcription factor
STRING	GLYMA10G00980.1	1e-123	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF311	33	199
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23240.1	6e-53	ethylene response factor 1

Link Out ? help Back to Top
Phytozome	Glyma.10G007000.1.p
Entrez Gene	100785936

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Pirrello J, et al. Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene. BMC Plant Biol., 2012. 12: p. 190 [PMID:23057995] Chai C, et al. Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance. BMC Genomics, 2015. 16: p. 596 [PMID:26268547] Du M, et al. MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato. Plant Cell, 2017. 29(8): p. 1883-1906 [PMID:28733419]