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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.08G256400.1.p | ||||||||
Common Name | GLYMA_08G256400, LOC100792572 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | TCP | ||||||||
Protein Properties | Length: 371aa MW: 41199.2 Da PI: 8.8228 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 148 | 6.3e-46 | 97 | 229 | 2 | 130 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec....eaesssssasnsss 87 a+kkdrhskihT++g+RdRRvRls+e+a++fFdLqd+LGfdk+s+t++WL++++k+aikelt+++ s+ s+ ++++ +s+ +++ + Glyma.08G256400.1.p 97 ATKKDRHSKIHTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLDWLFTKSKKAIKELTRSKHSADSFEfsssSDGEVVSTIHQDLH 186 89**************************************************************66666333345355555555555555 PP TCP 88 gkaaksaakskksqksaasalnlakesrakarararertrekm 130 +++ + +++k ++ a ++ +++kesr+kararar+rt++k Glyma.08G256400.1.p 187 QQQGVDLEEGKLKEPAAYCVKAKMKESREKARARARQRTSSKV 229 56667777999999999*********************99885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 5.2E-41 | 98 | 228 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 36.401 | 99 | 157 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 10.304 | 211 | 228 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence Send to blast |
MFPSTNYTSS GSYPRFPSSS SSSTSPYPSF TLLHPENSSS SNTFLCDPLA LTYIPSHYHA 60 PIIPETLANW AVADCAILNQ DLGGALYGIT NKPEKKATKK DRHSKIHTSQ GLRDRRVRLS 120 IEIARKFFDL QDMLGFDKAS NTLDWLFTKS KKAIKELTRS KHSADSFEFS SSSDGEVVST 180 IHQDLHQQQG VDLEEGKLKE PAAYCVKAKM KESREKARAR ARQRTSSKVL CNISSEGKVQ 240 DLKKKCPATE NPQILNQLRS PLQPPHPQDV GGEVPRDDDF NVIEESIVIR RKLKHTLMSS 300 IHHQNAVIPK EASVNNSDYH SFPNLSPNWE ANNNGANGRS TFCAIASMNL STGLQIFGKS 360 WEECTNPHPS * |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00215 | DAP | Transfer from AT1G67260 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.08G256400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003530473.1 | 0.0 | transcription factor DICHOTOMA | ||||
TrEMBL | K7L8W0 | 0.0 | K7L8W0_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA08G28691.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1738 | 32 | 94 | Representative plant | OGRP180 | 15 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67260.2 | 1e-31 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.08G256400.1.p |
Entrez Gene | 100792572 |