PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.08G165700.2.p | ||||||||
Common Name | GLYMA_08G165700, LOC100796987 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NF-YC | ||||||||
Protein Properties | Length: 272aa MW: 30425.4 Da PI: 6.6503 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 175.5 | 5.2e-55 | 84 | 188 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd 87 ql++fw++q ie++ dfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa++r d Glyma.08G165700.2.p 84 QLQMFWSNQmqeIEQTIDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRND 173 89******988889**************************************************************************** PP NF-YC 88 ifdflvdivprdelk 102 +fdflvdi+prdelk Glyma.08G165700.2.p 174 VFDFLVDIIPRDELK 188 ************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 2.1E-34 | 63 | 178 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.4E-21 | 106 | 169 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 3.2E-37 | 107 | 184 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MDKSEQTQQQ QQQQQHVMGV AAGASQMAYS SHYPTASMVA SGTPAVTAPS PTQAPAAFSS 60 SAHQLAYQQA QHFHHQQQQH QQQQLQMFWS NQMQEIEQTI DFKNHSLPLA RIKKIMKADE 120 DVRMISAEAP VIFAKACEMF ILELTLRSWI HTEENKRRTL QKNDIAAAIS RNDVFDFLVD 180 IIPRDELKEE GLGITKATIP LVGSPADMPY YYVPPQHPVV GPPGMIMGKP IGAEQATLYS 240 TQQPRPPVAF MPWPHTQPLQ QQPPQHQQTD S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 4e-57 | 92 | 184 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 156 | 162 | RRTLQKN |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.7826 | 0.0 | cotyledon| leaf| meristem| seed coat| somatic embryo| vegetative bud |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.08G165700.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT098376 | 0.0 | BT098376.1 Soybean clone JCVI-FLGm-12K24 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001349561.1 | 0.0 | nuclear factor Y transcription factor family protein | ||||
Refseq | XP_028244073.1 | 0.0 | nuclear transcription factor Y subunit C-2-like | ||||
TrEMBL | A0A445JFL6 | 0.0 | A0A445JFL6_GLYSO; Nuclear transcription factor Y subunit C-4 isoform A | ||||
TrEMBL | I1KTY0 | 0.0 | I1KTY0_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA08G17630.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 6e-78 | nuclear factor Y, subunit C2 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.08G165700.2.p |
Entrez Gene | 100796987 |