PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bZIP

Protein Properties

Length: 209aa MW: 23743.8 Da PI: 6.7882

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.08G115300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	44.1	4.3e-14	72	130	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 ++ +r+ +NRe+ArrsR RK++ +e L ++L++eN+++ ++ ++++ ++++e+ Glyma.08G115300.1.p 72 RKRKRMLSNRESARRSRMRKQQHLEGLSAQLDQLKKENTQMNTNIGISTQLYLNVEAEN 130 6889***************************************9999999988887776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	9.3E-17	68	132	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.404	70	116	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.2E-10	71	120	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.2E-10	72	115	No hit	No description
SuperFamily	SSF57959	1.76E-11	72	124	No hit	No description
CDD	cd14702	1.15E-18	73	123	No hit	No description
PROSITE pattern	PS00036	0	75	90	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MSSPVISEIL LSGFTINSSL RRRTHLVQSF SVVFLHWFYY MASPGGSGTY SSGSSSLQNS 60 GSEGDRDIME QRKRKRMLSN RESARRSRMR KQQHLEGLSA QLDQLKKENT QMNTNIGIST 120 QLYLNVEAEN AILRAQMEEL SKRLNSLNEM ISLINSTTTT NNCLMFDEAQ ETTTQLFNDC 180 GFMDAWNYGI PLNQQIMAYA DNDMLMMY*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	84	91	RRSRMRKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.21441	0.0	flower\| leaf\| root\| somatic embryo
Gma.33797	0.0	root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in the micropylar endosperm and radicle tip in early germinating seeds. {ECO:0000269\|PubMed:23461773}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269\|PubMed:23461773}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.08G115300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT031137	0.0	KT031137.1 Glycine max clone HN_CCL_138 BZIP transcription factor (Glyma08g12170.1) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001237147.1	1e-121	bZIP transcription factor bZIP110
Refseq	XP_028243564.1	1e-121	bZIP transcription factor 11-like
Swissprot	C0Z2L5	2e-36	BZP44_ARATH; bZIP transcription factor 44
TrEMBL	A0A0R0IKI9	1e-152	A0A0R0IKI9_SOYBN; Uncharacterized protein
STRING	GLYMA08G12170.1	1e-120	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF613	34	147
Representative plant	OGRP551	16	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34590.1	4e-35	G-box binding factor 6

Link Out ? help Back to Top
Phytozome	Glyma.08G115300.1.p

Publications ? help Back to Top
Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Pedrotti L, et al. Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness. Plant Cell, 2018. 30(2): p. 495-509 [PMID:29348240]