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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.07G243300.1.p |
| Common Name | GLYMA_07G243300, LOC100814930 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
ARR-B |
| Protein Properties |
Length: 680aa MW: 74250.5 Da PI: 5.9887 |
| Description |
ARR-B family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.07G243300.1.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | G2-like | 90.4 | 1.6e-28 | 213 | 266 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl
Glyma.07G243300.1.p 213 KPRVVWSVELHQQFVAAVDQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 266
79*******************.********************************8 PP
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| 2 | Response_reg | 76.3 | 1.1e-25 | 35 | 143 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88
vl+vdD+p+ +++l+++l+ y ev+ + +e al ll+e++ +D+++ D+ mp+mdG++ll++i e +lp+i+++a + ++ + +
Glyma.07G243300.1.p 35 VLVVDDDPTCLMILEKMLRTCLY-EVTKCNRAETALSLLRENKngFDIVISDVHMPDMDGFKLLEHIGLEM-DLPVIMMSADDGKSVVMK 122
89*********************.***************999999**********************6654.8***************** PP
HHHTTESEEEESS--HHHHHH CS
Response_reg 89 alkaGakdflsKpfdpeelvk 109
+ Ga d+l Kp+ +e+l +
Glyma.07G243300.1.p 123 GVTHGACDYLIKPVRIEALKN 143
*****************9986 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009873 | Biological Process | ethylene-activated signaling pathway |
| GO:0010082 | Biological Process | regulation of root meristem growth |
| GO:0010119 | Biological Process | regulation of stomatal movement |
| GO:0010150 | Biological Process | leaf senescence |
| GO:0071368 | Biological Process | cellular response to cytokinin stimulus |
| GO:0080113 | Biological Process | regulation of seed growth |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 680 aa
Download sequence Send
to blast |
MNLSNGKGSM STLTASVVMK SGDAVSDQFP AGLRVLVVDD DPTCLMILEK MLRTCLYEVT 60
KCNRAETALS LLRENKNGFD IVISDVHMPD MDGFKLLEHI GLEMDLPVIM MSADDGKSVV 120
MKGVTHGACD YLIKPVRIEA LKNIWQHVVR KRKNEWKDAE QSGSAEEGDR QPKASDEADY 180
SSSANEGSWR NSKKRRDEEE EAEDRDDTST LKKPRVVWSV ELHQQFVAAV DQLGIDKAVP 240
KKILELMNVP GLTRENVASH LQKYRLYLRR LSGVSQHQNN MNNSFLSPQE ATFGTISSIN 300
GIDLQTLAVA GQLPAQSLAT LQAAGLGRPT GKAGVPMPLM DQRNLFSFEN PRLRFGEGQQ 360
QHLSTSKPMN LLHGIPTNME PKQLANLHQS TQSIGSLNMR VNASATQGSP LLMQMAQSQP 420
RGQMLSENIG PRVPRLPSSL GQPTVSNGIS NGLLGRNGIA GNNRGPAYNP VPPSSSLLSF 480
PMNQTSEMSV NNSFPLGSTP GISSITTKGS FQEEVTSGIK GSGGFPSYDI FNELHHQKPH 540
DWEITNPNLT YNASQHANPL QGNIDVTPSV LVHQGFSSTQ QTGQSRDAAL IGKAMFSMGE 600
GLEQNNFQNA SQNLNSLLLD NSIRVKAERI PDASSQTNLF PEHYGQEDLM SALLKQQEGM 660
GPSENEFDFD GYSLDNIPV*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Detected in the whole plant. Predominantly expressed in pollen. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:15173562, ECO:0000269|PubMed:9891419}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
| Publications
? help Back to Top |
- Takahashi N, et al.
Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots.
Curr. Biol., 2013. 23(18): p. 1812-7
[PMID:24035544] - Ge XM, et al.
Heterotrimeric G protein mediates ethylene-induced stomatal closure via hydrogen peroxide synthesis in Arabidopsis.
Plant J., 2015. 82(1): p. 138-50
[PMID:25704455] - Takahashi N,Umeda M
Cytokinins promote onset of endoreplication by controlling cell cycle machinery.
Plant Signal Behav, 2014. 9(8): p. e29396
[PMID:25763620] - Kobayashi K, et al.
Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling.
Plant Physiol., 2017. 173(4): p. 2340-2355
[PMID:28193764] - Arnaud D, et al.
Cytokinin-Mediated Regulation of Reactive Oxygen Species Homeostasis Modulates Stomatal Immunity in Arabidopsis.
Plant Cell, 2017. 29(3): p. 543-559
[PMID:28254779] - Zhang TQ, et al.
A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
Plant Cell, 2017. 29(5): p. 1073-1087
[PMID:28389585] - Meng WJ, et al.
Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
Plant Cell, 2017. 29(6): p. 1357-1372
[PMID:28576846] - Zhang F,May A,Irish VF
Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
Trends Plant Sci., 2017. 22(10): p. 815-817
[PMID:28886911] - Takatsuka H,Higaki T,Umeda M
Actin Reorganization Triggers Rapid Cell Elongation in Roots.
Plant Physiol., 2018. 178(3): p. 1130-1141
[PMID:30185441]
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