PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

ARR-B

Protein Properties

Length: 634aa MW: 69792.6 Da PI: 6.6105

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.07G171200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	88.9	4.7e-28	194	247	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv+av+qL G +kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl Glyma.07G171200.1.p 194 KPRVVWSVELHQQFVSAVNQL-GLDKAVPKRILELMNVPGLTRENVASHLQKFRL 247 79*****************.******************************8 PP
2	Response_reg	74.8	3.2e-25	14	122	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 vl+vdD+ + +++++q+ + +y +v+++++++ al+ll+e++ +D++l D+ mp+mdG++ll++ e +lp+i++++ ++ + + + Glyma.07G171200.1.p 14 VLVVDDDATTLKIIEQMSIRCRY-RVTTCTEATVALNLLRERKgcFDVVLSDVHMPDMDGYKLLEHVGLEM-DLPVIMMSGDSTTSAVMK 101 89*******************.***************************************6644.8************* PP HHHTTESEEEESS--HHHHHH CS Response_reg 89 alkaGakdflsKpfdpeelvk 109 ++ Ga d+l Kp+ +eel++ Glyma.07G171200.1.p 102 GIRHGACDYLIKPVREEELRN 122 *****************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF036392	1.7E-151	2	597	IPR017053	Response regulator B-type, plant
Gene3D	G3DSA:3.40.50.2300	1.9E-39	11	141	No hit	No description
SuperFamily	SSF52172	2.42E-33	11	133	IPR011006	CheY-like superfamily
SMART	SM00448	6.8E-29	12	124	IPR001789	Signal transduction response regulator, receiver domain
PROSITE profile	PS50110	40.493	13	128	IPR001789	Signal transduction response regulator, receiver domain
Pfam	PF00072	1.4E-21	14	123	IPR001789	Signal transduction response regulator, receiver domain
CDD	cd00156	1.14E-25	15	127	No hit	No description
Gene3D	G3DSA:1.10.10.60	7.8E-30	191	252	IPR009057	Homeodomain-like
PROSITE profile	PS51294	10.194	191	250	IPR017930	Myb domain
SuperFamily	SSF46689	2.15E-19	192	251	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.9E-24	194	247	IPR006447	Myb domain, plants
Pfam	PF00249	2.4E-7	196	245	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000160	Biological Process	phosphorelay signal transduction system
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 634 aa Download sequence Send to blast
MAPAAAEFPV GLRVLVVDDD ATTLKIIEQM SIRCRYRVTT CTEATVALNL LRERKGCFDV 60 VLSDVHMPDM DGYKLLEHVG LEMDLPVIMM SGDSTTSAVM KGIRHGACDY LIKPVREEEL 120 RNIWQHVVRK FWNDSKEQDN SGSMEDSDQN KRGNDDAEYT SVADAAVVKA PKKRSSLKEE 180 DIELESDDPA ASKKPRVVWS VELHQQFVSA VNQLGLDKAV PKRILELMNV PGLTRENVAS 240 HLQKFRLYLK RLTGVAQQQN GMLNTVPGPI ESNLGTNGRF DVQALAAAGH VPPETLAAIH 300 AELLGHPTNN IMSTVDQTTL LQASIQGLKH SHAGHAVAYG QPLVKCPSNI GKNFSPSILT 360 VNDTSSGYGA WLSSNNTIGL VRPNNSVERV GIQNNNMLIL EHQQRQQPQQ KQQQQQQKQQ 420 QQLQQQSLIH DRSCSINVQP SCLVVPSQSS ETFQAINSPA SVNQDCSFAW NAIIDYSLLP 480 QKSNNSFSAS QFPGGDTKAR GVLYGYTTPS SCSTSSSNGN IQQLQNSTLT FGAARPLPSL 540 LPMTDRKDPY GFKSGDLLDQ VCFRNLGFVG KDSCIPSRFV ENEIESSVSD FTQMKVNVDI 600 SGNRQKEEPN IPKVSHPIIE RYPSRDHSSV FAE*

Sequence ? help Back to Top

Protein Sequence Length: 634 aa Download sequence Send to blast

MAPAAAEFPV GLRVLVVDDD ATTLKIIEQM SIRCRYRVTT CTEATVALNL LRERKGCFDV  60
VLSDVHMPDM DGYKLLEHVG LEMDLPVIMM SGDSTTSAVM KGIRHGACDY LIKPVREEEL  120
RNIWQHVVRK FWNDSKEQDN SGSMEDSDQN KRGNDDAEYT SVADAAVVKA PKKRSSLKEE  180
DIELESDDPA ASKKPRVVWS VELHQQFVSA VNQLGLDKAV PKRILELMNV PGLTRENVAS  240
HLQKFRLYLK RLTGVAQQQN GMLNTVPGPI ESNLGTNGRF DVQALAAAGH VPPETLAAIH  300
AELLGHPTNN IMSTVDQTTL LQASIQGLKH SHAGHAVAYG QPLVKCPSNI GKNFSPSILT  360
VNDTSSGYGA WLSSNNTIGL VRPNNSVERV GIQNNNMLIL EHQQRQQPQQ KQQQQQQKQQ  420
QQLQQQSLIH DRSCSINVQP SCLVVPSQSS ETFQAINSPA SVNQDCSFAW NAIIDYSLLP  480
QKSNNSFSAS QFPGGDTKAR GVLYGYTTPS SCSTSSSNGN IQQLQNSTLT FGAARPLPSL  540
LPMTDRKDPY GFKSGDLLDQ VCFRNLGFVG KDSCIPSRFV ENEIESSVSD FTQMKVNVDI  600
SGNRQKEEPN IPKVSHPIIE RYPSRDHSSV FAE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1irz_A	5e-22	191	253	2	64	ARR10-B
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.59932	0.0	flower\| root

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250\|UniProtKB:Q940D0}.
UniProt	Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250\|UniProtKB:Q940D0}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.07G171200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015043	0.0	AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003528343.1	0.0	two-component response regulator ORR21 isoform X1
Refseq	XP_006583726.1	0.0	two-component response regulator ORR21 isoform X1
Refseq	XP_028240740.1	0.0	two-component response regulator ORR21-like isoform X1
Refseq	XP_028240741.1	0.0	two-component response regulator ORR21-like isoform X1
Swissprot	A2XE31	1e-143	ORR21_ORYSI; Two-component response regulator ORR21
Swissprot	Q8H7S7	1e-143	ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBL	A0A0B2RQH3	0.0	A0A0B2RQH3_GLYSO; Two-component response regulator
TrEMBL	I1KKW6	0.0	I1KKW6_SOYBN; Two-component response regulator
STRING	GLYMA07G26890.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11808	24	33
Representative plant	OGRP292	17	120

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16110.1	1e-110	response regulator 2

Link Out ? help Back to Top
Phytozome	Glyma.07G171200.1.p
Entrez Gene	100804937

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]