PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G173700.2.p
Common NameGLYMA_06G173700, LOC100809906
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 563aa    MW: 61062.4 Da    PI: 4.311
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G173700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.52.9e-10228250426
                          ---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                          e C f+++tGtCk+G +CkF+H+
  Glyma.06G173700.2.p 228 EDCAFYLKTGTCKFGFNCKFNHP 250
                          89********************9 PP
2zf-CCCH28.82.1e-09274296325
                          S---SGGGGTS--TTTTT-SS-S CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                          + +C++++r+G Ck+G  CkF+H
  Glyma.06G173700.2.p 274 QTECKYYLRSGGCKFGKACKFNH 296
                          679******************** PP
3zf-CCCH37.73.5e-12321344326
                          S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                          +++C++++rtG Ck+G++C+F+H+
  Glyma.06G173700.2.p 321 EKECHYYMRTGSCKFGANCRFNHP 344
                          679********************9 PP
4zf-CCCH29.11.7e-09455481127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          +++++C++f++tG Ck+ ++CkF+H++
  Glyma.06G173700.2.p 455 PGEPECSYFLKTGDCKFKSNCKFHHPK 481
                          5799*********************96 PP
5zf-CCCH33.85.9e-11503527327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          +  C +++r+G+Ck+G+ CkF H+p
  Glyma.06G173700.2.p 503 QTVCTYYRRYGICKFGPACKFDHPP 527
                          568********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902295.23E-6223252IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-4224251IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.305224252IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-8228250IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.742271299IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-4271298IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-7274296IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-5275299IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-4277298IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.356318346IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-6319345IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-5320345IPR000571Zinc finger, CCCH-type
PfamPF006429.0E-10321344IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4324343IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.061454482IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-4454481IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-7456481IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5459483IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-6500528IPR000571Zinc finger, CCCH-type
SMARTSM003567.9E-6500527IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.413500528IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-8503527IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-4505525IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MEPIESESVS SSAKDQQLGE PSSTVHPLDH DPQPSDLNRV TPVDDALGEE FQNKLDLKDG  60
GESENNGSNL EDGGEKLSED KGSNLEDASE KLGDEGAAAP EGGKGEGCDG DVGGVANDYG  120
VIGDDVVVAE DGGVVRDDLV VVDEDDDDGV AVRDDLVVVD EDDDDDGVVR NDVVVVVDVD  180
GWNGSDEGCD WIENENVNES ESDKVGVEYK DERSSGKAQQ YPLRPEAEDC AFYLKTGTCK  240
FGFNCKFNHP LRRKNLAKNE NAGEREEQEE RSGQTECKYY LRSGGCKFGK ACKFNHTRGK  300
SSSASSTAEL NFLGLPIRVG EKECHYYMRT GSCKFGANCR FNHPDPTAIG GGDSPSGYGN  360
GSSISLQGVS QSSISSWSST RPLNEPAPFV PVILSHNPGV SPQSSEWNGY QAPVYLSERS  420
LHPPSTYVMN NPAIESNVYM HHQKQMQVEE FPERPGEPEC SYFLKTGDCK FKSNCKFHHP  480
KNRIARLPPC NLSDKGLPLR PEQTVCTYYR RYGICKFGPA CKFDHPPPST MAGLDQQSSY  540
TNSAGVDVAE NGDADDGNQQ SV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.212690.0cotyledon| flower| meristem| pod| root| seed coat| somatic embryo| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G173700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2353400.0AC235340.1 Glycine max strain Williams 82 clone GM_WBb0086A04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006581890.10.0zinc finger CCCH domain-containing protein 43
RefseqXP_028236968.10.0zinc finger CCCH domain-containing protein 43-like
SwissprotQ9STM41e-137C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A445KB400.0A0A445KB40_GLYSO; Zinc finger CCCH domain-containing protein 43 isoform A
TrEMBLK7KVL20.0K7KVL2_SOYBN; Uncharacterized protein
STRINGGLYMA06G18253.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-120C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]