PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.06G173700.1.p | ||||||||
Common Name | GLYMA_06G173700, LOC100809906 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | C3H | ||||||||
Protein Properties | Length: 563aa MW: 61062.4 Da PI: 4.311 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 31.5 | 2.9e-10 | 228 | 250 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C f+++tGtCk+G +CkF+H+ Glyma.06G173700.1.p 228 EDCAFYLKTGTCKFGFNCKFNHP 250 89********************9 PP | |||||||
2 | zf-CCCH | 28.8 | 2.1e-09 | 274 | 296 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 + +C++++r+G Ck+G CkF+H Glyma.06G173700.1.p 274 QTECKYYLRSGGCKFGKACKFNH 296 679******************** PP | |||||||
3 | zf-CCCH | 37.7 | 3.5e-12 | 321 | 344 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C++++rtG Ck+G++C+F+H+ Glyma.06G173700.1.p 321 EKECHYYMRTGSCKFGANCRFNHP 344 679********************9 PP | |||||||
4 | zf-CCCH | 29.1 | 1.7e-09 | 455 | 481 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f++tG Ck+ ++CkF+H++ Glyma.06G173700.1.p 455 PGEPECSYFLKTGDCKFKSNCKFHHPK 481 5799*********************96 PP | |||||||
5 | zf-CCCH | 33.8 | 5.9e-11 | 503 | 527 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + C +++r+G+Ck+G+ CkF H+p Glyma.06G173700.1.p 503 QTVCTYYRRYGICKFGPACKFDHPP 527 568********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 5.23E-6 | 223 | 252 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-4 | 224 | 251 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.305 | 224 | 252 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.2E-8 | 228 | 250 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.742 | 271 | 299 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.1E-4 | 271 | 298 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.4E-7 | 274 | 296 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.88E-5 | 275 | 299 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.3E-4 | 277 | 298 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.356 | 318 | 346 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.01E-6 | 319 | 345 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.0E-5 | 320 | 345 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.0E-10 | 321 | 344 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-4 | 324 | 343 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.061 | 454 | 482 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.1E-4 | 454 | 481 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.2E-7 | 456 | 481 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-5 | 459 | 483 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.72E-6 | 500 | 528 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.9E-6 | 500 | 527 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.413 | 500 | 528 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-8 | 503 | 527 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.6E-4 | 505 | 525 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 563 aa Download sequence Send to blast |
MEPIESESVS SSAKDQQLGE PSSTVHPLDH DPQPSDLNRV TPVDDALGEE FQNKLDLKDG 60 GESENNGSNL EDGGEKLSED KGSNLEDASE KLGDEGAAAP EGGKGEGCDG DVGGVANDYG 120 VIGDDVVVAE DGGVVRDDLV VVDEDDDDGV AVRDDLVVVD EDDDDDGVVR NDVVVVVDVD 180 GWNGSDEGCD WIENENVNES ESDKVGVEYK DERSSGKAQQ YPLRPEAEDC AFYLKTGTCK 240 FGFNCKFNHP LRRKNLAKNE NAGEREEQEE RSGQTECKYY LRSGGCKFGK ACKFNHTRGK 300 SSSASSTAEL NFLGLPIRVG EKECHYYMRT GSCKFGANCR FNHPDPTAIG GGDSPSGYGN 360 GSSISLQGVS QSSISSWSST RPLNEPAPFV PVILSHNPGV SPQSSEWNGY QAPVYLSERS 420 LHPPSTYVMN NPAIESNVYM HHQKQMQVEE FPERPGEPEC SYFLKTGDCK FKSNCKFHHP 480 KNRIARLPPC NLSDKGLPLR PEQTVCTYYR RYGICKFGPA CKFDHPPPST MAGLDQQSSY 540 TNSAGVDVAE NGDADDGNQQ SV* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.21269 | 0.0 | cotyledon| flower| meristem| pod| root| seed coat| somatic embryo| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.06G173700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235340 | 0.0 | AC235340.1 Glycine max strain Williams 82 clone GM_WBb0086A04, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006581890.1 | 0.0 | zinc finger CCCH domain-containing protein 43 | ||||
Refseq | XP_028236968.1 | 0.0 | zinc finger CCCH domain-containing protein 43-like | ||||
Swissprot | Q9STM4 | 1e-137 | C3H43_ARATH; Zinc finger CCCH domain-containing protein 43 | ||||
TrEMBL | A0A445KB40 | 0.0 | A0A445KB40_GLYSO; Zinc finger CCCH domain-containing protein 43 isoform A | ||||
TrEMBL | K7KVL2 | 0.0 | K7KVL2_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA06G18253.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4156 | 33 | 61 | Representative plant | OGRP9141 | 7 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48440.1 | 1e-120 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.06G173700.1.p |
Entrez Gene | 100809906 |
Publications ? help Back to Top | |||
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