PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.05G203900.1.p | ||||||||
Common Name | GLYMA_05G203900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | WRKY | ||||||||
Protein Properties | Length: 100aa MW: 11269.6 Da PI: 8.4977 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 49.2 | 1.1e-15 | 32 | 77 | 15 | 59 |
-TT-S.S-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 15 vkgse.fprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +k+s+ p sY rC+++gC+vkk+++r ++d+++v++tYeg H h+ Glyma.05G203900.1.p 32 IKNSKaKPESYCRCSYRGCNVKKQIQRHSKDEEIVVTTYEGMHIHP 77 77776369*************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 9.4E-14 | 31 | 78 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.2E-8 | 31 | 78 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.0E-11 | 31 | 77 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.01E-12 | 36 | 78 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 15.365 | 39 | 79 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 100 aa Download sequence Send to blast |
MEKHQVVSPI SSSSSASPSD FKLGDHNSNA HIKNSKAKPE SYCRCSYRGC NVKKQIQRHS 60 KDEEIVVTTY EGMHIHPVQK STESFEHILR NDHIYSLTL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.36862 | 8e-78 | cotyledon| pod |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.05G203900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU019567 | 2e-75 | EU019567.1 Glycine max WRKY25 (WRKY25) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001237010.2 | 8e-39 | WRKY transcription factor 25 | ||||
Refseq | XP_028247153.1 | 8e-39 | probable WRKY transcription factor 75 | ||||
Swissprot | Q9FYA2 | 1e-23 | WRK75_ARATH; Probable WRKY transcription factor 75 | ||||
TrEMBL | A0A0R0JYR9 | 4e-67 | A0A0R0JYR9_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA08G01430.1 | 3e-38 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF35387 | 2 | 2 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13080.1 | 1e-25 | WRKY DNA-binding protein 75 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.05G203900.1.p |