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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.05G193300.1.p | ||||||||
Common Name | GLYMA_05G193300, LOC100780647 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NF-YB | ||||||||
Protein Properties | Length: 208aa MW: 23725.3 Da PI: 6.2463 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 178.6 | 5.7e-56 | 35 | 130 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 +eqdrflPianv+rimkkv+P n+kiskdaketvqecvsefisfvt+easdkcqrekrktingdd++wa++tlGfedyveplk+yl+ky+ Glyma.05G193300.1.p 35 KEQDRFLPIANVGRIMKKVIPPNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDVIWAITTLGFEDYVEPLKTYLQKYK 124 89**************************************************************************************** PP NF-YB 92 elegek 97 e+egek Glyma.05G193300.1.p 125 EIEGEK 130 ***996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 2.2E-53 | 32 | 154 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 5.59E-41 | 37 | 146 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.0E-27 | 40 | 104 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 1.7E-20 | 68 | 86 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 71 | 87 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 1.7E-20 | 87 | 105 | No hit | No description |
PRINTS | PR00615 | 1.7E-20 | 106 | 124 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MEDESHNNTL PNGFNTGSPE SPFLKTSTTT TQHNKEQDRF LPIANVGRIM KKVIPPNGKI 60 SKDAKETVQE CVSEFISFVT GEASDKCQRE KRKTINGDDV IWAITTLGFE DYVEPLKTYL 120 QKYKEIEGEK LSIPKQMRSE QRLQQHHNNY HDQNNQPFNG AYASSNLISQ PPYVPTDQKF 180 SLTFSPNSIQ SQLRQQDQID SVGHWYE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1n1j_A | 8e-45 | 35 | 125 | 3 | 93 | NF-YB |
4awl_B | 7e-45 | 35 | 125 | 4 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
4csr_A | 7e-45 | 35 | 125 | 4 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in flowers and green siliques. {ECO:0000269|PubMed:11250072}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.05G193300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003524310.1 | 1e-155 | nuclear transcription factor Y subunit B-7-like | ||||
Refseq | XP_028233311.1 | 1e-155 | nuclear transcription factor Y subunit B-7-like | ||||
Swissprot | Q9SIT9 | 2e-68 | NFYB7_ARATH; Nuclear transcription factor Y subunit B-7 | ||||
TrEMBL | A0A0B2RPC7 | 1e-154 | A0A0B2RPC7_GLYSO; Nuclear transcription factor Y subunit B-7 | ||||
TrEMBL | I1K511 | 1e-154 | I1K511_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA05G32680.1 | 1e-154 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13249 | 24 | 30 | Representative plant | OGRP168 | 17 | 170 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G13570.1 | 1e-66 | nuclear factor Y, subunit B7 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.05G193300.1.p |
Entrez Gene | 100780647 |
Publications ? help Back to Top | |||
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