PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G108600.4.p
Common NameGLYMA_05G108600
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family AP2
Protein Properties Length: 575aa    MW: 64574.2 Da    PI: 7.0864
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G108600.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.23.1e-16219278155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV++++++gr++A+++d  ++  g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Glyma.05G108600.4.p 219 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqsRKgRQVYLGGYDMEEKAARAYDLAALKYWG 278
                          78*******************988886678446*************************98 PP
2AP234.55.1e-11337381855
                  AP2   8 wdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          ++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Glyma.05G108600.4.p 337 RHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 381
                          78899******988532...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.15E-17219288IPR016177DNA-binding domain
CDDcd000181.95E-21219286No hitNo description
PfamPF008475.4E-13219278IPR001471AP2/ERF domain
SMARTSM003804.3E-29220292IPR001471AP2/ERF domain
PROSITE profilePS5103219.203220286IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-16220287IPR001471AP2/ERF domain
PRINTSPR003675.8E-5221232IPR001471AP2/ERF domain
PRINTSPR003675.8E-5268288IPR001471AP2/ERF domain
CDDcd000181.87E-22321391No hitNo description
SMARTSM003804.6E-28322395IPR001471AP2/ERF domain
PROSITE profilePS5103218.479322389IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-15337390IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.6E-15337389IPR001471AP2/ERF domain
PfamPF008476.8E-6337381IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MATTSTPKLE NFLGGEAMGT PHHYECSATE TMPLSLDSVF YIQPSRRDPN NNQTYQNHVQ  60
HISTNQQQQQ QELQAYYSTL RNHDMILEGS KQSQTSDNNN LHVQNMGGDD AVPVPGLKSW  120
EVRNFQASHA HESKMIVPHV EENAGESGSI GSMAYGDLQS LSLSMSPSSQ SSSVTSSHRA  180
SPAVVDSVAM DTKKRGPEKV DQKQIVHRKS IDTFGQRTSQ YRGVTRHRWT GRYEAHLWDN  240
SCKKEGQSRK GRQVYLGGYD MEEKAARAYD LAALKYWGPS THINFPLENY QNELEEMKNM  300
TRQEYVAHLR RKSSGFSRGA SMYRGVTRSH RPTTTHRHHQ HGRWQARIGR VAGNKDLYLG  360
TFSTQEEAAE AYDIAAIKFR GANAVTNFDI TRYDVEKIMA SSNLLSSELA RRNRETDNET  420
QCIDQNHNKP SAYEDTQEAI LMHQKSCESE NDQWKMVLYQ SSQQLEQNPP TIESDRTNQS  480
FAVALDNMFH QEVEESSKAR THVSNPSSLA TSLSSSREGS PDRTSLPMLS GMPSTASKLL  540
ATNPNNVNSW DPSPHLRPAL TLPQMPVFAA WTDA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.385200.0epicotyl| meristem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed at the base of the stem. Expressed in stems. Expressed a low levels in crown roots and seeds (PubMed:21807632). Expressed in the stem region where adventitious (crown) root initiation occurs (PubMed:21481033). {ECO:0000269|PubMed:21481033, ECO:0000269|PubMed:21807632}.
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G108600.4.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2351910.0AC235191.1 Glycine max strain Williams 82 clone GM_WBb0012A18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006579959.10.0AP2-like ethylene-responsive transcription factor ANT isoform X1
SwissprotQ84Z021e-142CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A0R0JTK80.0A0A0R0JTK8_SOYBN; Uncharacterized protein
STRINGGLYMA05G22970.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-121AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]