PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G018900.1.p
Common NameGLYMA_05G018900
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MIKC_MADS
Protein Properties Length: 244aa    MW: 27685.3 Da    PI: 6.9637
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G018900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF100.18.7e-32959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye+ss
  Glyma.05G018900.1.p  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFSS 59
                         79***********************************************96 PP
2K-box88.71.1e-298617214100
                K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                            + +qe+ +Lk+++e Lqr+qR+llGedL +++ +eL+qLe+qLe +l++iRs+K++++l+q+++l ++e  l e+n+ Lr+klee
  Glyma.05G018900.1.p  86 DTQNYQEYLRLKARVEVLQRSQRNLLGEDLAQMNTNELEQLENQLEAALRNIRSTKTQFMLDQLSDLHHRETLLIETNNVLRSKLEE 172
                          445679******************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.782161IPR002100Transcription factor, MADS-box
SMARTSM004322.7E-41160IPR002100Transcription factor, MADS-box
CDDcd002652.24E-45278No hitNo description
SuperFamilySSF554557.06E-34280IPR002100Transcription factor, MADS-box
PRINTSPR004048.3E-33323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.3E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004048.3E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004048.3E-333859IPR002100Transcription factor, MADS-box
PfamPF014869.6E-2686170IPR002487Transcription factor, K-box
PROSITE profilePS5129714.72386176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFSST  60
SSMMKTLEKY QKYSYSALET TRPINDTQNY QEYLRLKARV EVLQRSQRNL LGEDLAQMNT  120
NELEQLENQL EAALRNIRST KTQFMLDQLS DLHHRETLLI ETNNVLRSKL EETDHSQVQV  180
SLALEAGGPS IQYTNFPPQS EGFFEPVGVN PTLQIGYNQT GPDDTNVGAS SLSMHGFASG  240
WML*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A4e-259117022101Developmental protein SEPALLATA 3
4ox0_B4e-259117022101Developmental protein SEPALLATA 3
4ox0_C4e-259117022101Developmental protein SEPALLATA 3
4ox0_D4e-259117022101Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts redundantly with J2 to control meristem maturation and inflorescence architecture. {ECO:0000269|PubMed:28528644}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G018900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0932640.0BT093264.1 Soybean clone JCVI-FLGm-14C7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028231277.10.0MADS-box protein EJ2-like
SwissprotQ7Y0401e-106EJ2_SOLLC; MADS-box protein EJ2
TrEMBLA0A445KHZ31e-180A0A445KHZ3_GLYSO; MADS-box protein EJ2
TrEMBLK7KNE21e-180K7KNE2_SOYBN; Uncharacterized protein
STRINGGLYMA05G07286.11e-180(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22932178
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.18e-85MIKC_MADS family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Soyk S, et al.
    Bypassing Negative Epistasis on Yield in Tomato Imposed by a Domestication Gene.
    Cell, 2017. 169(6): p. 1142-1155.e12
    [PMID:28528644]