PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.04G217400.2.p | ||||||||
Common Name | GLYMA_04G217400, Glyma04g39510.1, LOC100793215 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 282aa MW: 30850.4 Da PI: 10.0135 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.4 | 2.3e-20 | 135 | 184 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrd + + +r++lg+f tae Aa+a+++a+++++g Glyma.04G217400.2.p 135 KYRGVRQRP-WGKWAAEIRDpF-----KaARVWLGTFETAEAAARAYDEAALRFRG 184 8********.**********66.....56************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 4.6E-33 | 134 | 193 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.40E-23 | 135 | 194 | No hit | No description |
SMART | SM00380 | 5.2E-37 | 135 | 198 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.659 | 135 | 192 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-23 | 135 | 193 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.7E-14 | 135 | 184 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.8E-12 | 136 | 147 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.8E-12 | 158 | 174 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MMNNPALLSR LFPGINRERE MSAMVSALTH VVSGEVPTGD SSSVLHHQPH DDDAVTVKPN 60 MPSTTPFSST YVVATSSLKR SRQHDTYTPS FSHPPSSFPA MPTSAECSKS GMGNAVYEYR 120 TRGTENVKKE EGRRKYRGVR QRPWGKWAAE IRDPFKAARV WLGTFETAEA AARAYDEAAL 180 RFRGSKAKLN FPENVTLRQP QFTVSTSTDP FQLSGTNLYD HRMFLTSNTM ASHHLQSSLP 240 LPPATSSSLT SPPQNITSLS SLYSAQLPPW SASGHSSSSS P* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-24 | 134 | 195 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 6e-24 | 134 | 195 | 4 | 66 | ATERF1 |
3gcc_A | 6e-24 | 134 | 195 | 4 | 66 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.27261 | 0.0 | leaf| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.04G217400.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031077 | 0.0 | KT031077.1 Glycine max clone HN_CCL_100 AP2-EREBP transcription factor (Glyma04g39510.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003523249.1 | 0.0 | ethylene-responsive transcription factor ABR1 | ||||
TrEMBL | A0A0K2CTB3 | 0.0 | A0A0K2CTB3_SOYBN; AP2-EREBP transcription factor (Fragment) | ||||
STRING | GLYMA04G39510.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G43160.1 | 1e-26 | related to AP2 6 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.04G217400.2.p |
Entrez Gene | 100793215 |
Publications ? help Back to Top | |||
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