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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.04G151100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 233aa MW: 26447.7 Da PI: 4.2757 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 35.7 | 2.1e-11 | 13 | 62 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ G+r+++ +g+W+ eI+d +r +lg++ taeeA ++ +l+g Glyma.04G151100.1.p 13 KFCGIRQRP-WGKWATEIWDlA----RRMCLWLGTYETAEEAIMVYDDTIIRLRG 62 667******.**********54....359******************99999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.12E-24 | 12 | 69 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 6.2E-21 | 13 | 70 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.899 | 13 | 70 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.75E-15 | 13 | 70 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.0E-23 | 13 | 76 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-4 | 14 | 62 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-6 | 14 | 25 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-6 | 36 | 52 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MRKKIIDPSS GKKFCGIRQR PWGKWATEIW DLARRMCLWL GTYETAEEAI MVYDDTIIRL 60 RGSDALTNFM LPQRDSPSPL SVVAETPTEV CEMKVVVTEE AFNSSYDSSE DHCHHKLSSP 120 TLFRSNSSKE KFESQQKVEE VLRECEGETE TSLFEETKEE NLNLLHQSQM LGETVLFSSE 180 EGFSDESSIT LANWLIDFDR ACPSPSSLCQ VDDFFQDILL ASDPVTTTNM LF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-17 | 9 | 71 | 1 | 64 | ATERF1 |
3gcc_A | 3e-17 | 9 | 71 | 1 | 64 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.04G151100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003527973.1 | 1e-103 | pathogenesis-related genes transcriptional activator PTI6 | ||||
Refseq | XP_028236041.1 | 1e-103 | pathogenesis-related genes transcriptional activator PTI6-like | ||||
TrEMBL | A0A0R0K8K4 | 1e-171 | A0A0R0K8K4_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA06G13040.2 | 1e-103 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF35274 | 2 | 2 |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 4e-25 | cytokinin response factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.04G151100.1.p |