PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

ERF

Protein Properties

Length: 193aa MW: 21589.2 Da PI: 5.381

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.04G067200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	58.2	2.1e-18	5	55	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr++ +g+Wv+eIr+p +r++lg+f tae Aa+a+++a+ ++g Glyma.04G067200.1.p 5 KKFRGVRQRQ-WGSWVSEIRHP-----LlkRRVWLGTFETAEAAARAYDQAAILMNG 55 59***999.******8.....334********************98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	1.72E-22	5	65	No hit	No description
PROSITE profile	PS51032	22.036	6	63	IPR001471	AP2/ERF domain
SMART	SM00380	1.8E-39	6	69	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	3.92E-20	6	65	IPR016177	DNA-binding domain
Pfam	PF00847	2.1E-11	6	55	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.4E-32	6	65	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.9E-10	7	18	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.9E-10	29	45	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MVQAKKFRGV RQRQWGSWVS EIRHPLLKRR VWLGTFETAE AAARAYDQAA ILMNGQNAKT 60 NFPTSKNQAE ADHDNNNTFL SPKALSELLS TKLRKYCKDP APSLTCLRLD ADNSHIGVWQ 120 KGAGPHSGSN WVMRVELGKK QIITEGESTG SPQSTNIGAV ENNEVEVEVE VEEEEEEDRV 180 ALQMIEELLN WN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	2e-17	2	70	1	70	ATERF1
3gcc_A	2e-17	2	70	1	70	ATERF1
5wx9_A	1e-16	6	67	14	76	Ethylene-responsive transcription factor ERF096
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.24460	1e-148	flower\| leaf\| seed coat

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Found in all organs, mostly in veins, epidermis and trichome bases. Specific expression in lateral root tips. {ECO:0000269\|PubMed:15319479}.

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269\|PubMed:15319479}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.04G067200.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By wounding in cauline leaves, stems, and siliques, but not in rosette leaves. {ECO:0000269\|PubMed:15319479}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003522617.1	1e-141	ethylene-responsive transcription factor SHINE 2
Refseq	XP_028228013.1	1e-141	ethylene-responsive transcription factor SHINE 2-like
Swissprot	Q3E958	3e-78	SHN3_ARATH; Ethylene-responsive transcription factor SHINE 3
TrEMBL	A0A0B2PFS8	1e-140	A0A0B2PFS8_GLYSO; Ethylene-responsive transcription factor SHINE 3
TrEMBL	I1JUD1	1e-140	I1JUD1_SOYBN; Uncharacterized protein
STRING	GLYMA04G07140.1	1e-141	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF576	33	144
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11190.1	8e-69	ERF family protein

Link Out ? help Back to Top
Phytozome	Glyma.04G067200.1.p
Entrez Gene	100806821

Publications ? help Back to Top
Djemal R,Khoudi H Isolation and molecular characterization of a novel WIN1/SHN1 ethylene-responsive transcription factor TdSHN1 from durum wheat (Triticum turgidum. L. subsp. durum). Protoplasma, 2015. 252(6): p. 1461-73 [PMID:25687296] Sadler C, et al. Wax and cutin mutants of Arabidopsis: Quantitative characterization of the cuticular transport barrier in relation to chemical composition. Biochim. Biophys. Acta, 2016. 1861(9 Pt B): p. 1336-1344 [PMID:26965486]