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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.03G255000.5.p | ||||||||
Common Name | GLYMA_03G255000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bZIP | ||||||||
Protein Properties | Length: 423aa MW: 45285.2 Da PI: 8.6039 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 70.6 | 2.4e-22 | 277 | 339 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkrerrkq+NRe+ArrsR+RK+ae+eeL++kv++L aeN +Lk+e+++l++ ++k++ e+ Glyma.03G255000.5.p 277 ERELKRERRKQSNRESARRSRLRKQAETEELARKVESLNAENATLKSEINRLTESSEKMRVEN 339 89*********************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07777 | 1.1E-37 | 1 | 98 | IPR012900 | G-box binding protein, multifunctional mosaic region |
Pfam | PF16596 | 1.1E-26 | 131 | 260 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 4.8E-17 | 272 | 336 | No hit | No description |
Pfam | PF00170 | 3.3E-20 | 277 | 339 | IPR004827 | Basic-leucine zipper domain |
SMART | SM00338 | 2.6E-21 | 277 | 341 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 13.415 | 279 | 342 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.19E-10 | 280 | 335 | No hit | No description |
CDD | cd14702 | 3.82E-21 | 282 | 330 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 284 | 299 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 423 aa Download sequence Send to blast |
MGNSEEEKST KTEKPSSPVT MANQTNQTNI HVYPDWAAMQ AYYGPRVTMP PYYNSAVASG 60 HAPHPYMWGP PQPMMPPYGP PYAAIYPHGG VYTHPAVPIG PLTHSQGVPS SPAAGTPLSI 120 ETPPKSSGNT DQGLMKKLKE FDGLAMSIGN GHAESAERGG ENRLSQSVDT EGSSDGSDGN 180 TSGANQSRRK RSREGTPTTD GEGKTEIQGS PISKETAASN KMLGVVPASV AGTIVGHVVS 240 SGMTTALELR NPSSVHSKTS APQPCPVLPA EAWVQNEREL KRERRKQSNR ESARRSRLRK 300 QAETEELARK VESLNAENAT LKSEINRLTE SSEKMRVENA TLRGKLKNAQ LGQTQEITLK 360 IIDSQRATPV STENLLSRVN NSGSNDRTVE DENGFCENKP NSGAKLHQLL DTSPRADAVA 420 AG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 293 | 299 | RRSRLRK |
2 | 293 | 300 | RRSRLRKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.32876 | 0.0 | cotyledon| epicotyl| hypocotyl| leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00318 | DAP | Transfer from AT2G46270 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.03G255000.5.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031145 | 0.0 | KT031145.1 Glycine max clone HN_CCL_210 BZIP transcription factor (Glyma19g44190.2) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001336230.1 | 0.0 | bZIP transcription factor bZIP77 isoform 1 | ||||
Refseq | XP_025983484.1 | 0.0 | bZIP transcription factor bZIP77 isoform X1 | ||||
Refseq | XP_025983485.1 | 0.0 | bZIP transcription factor bZIP77 isoform X1 | ||||
Refseq | XP_028226821.1 | 0.0 | common plant regulatory factor 1-like isoform X1 | ||||
Refseq | XP_028226822.1 | 0.0 | common plant regulatory factor 1-like isoform X1 | ||||
Refseq | XP_028226823.1 | 0.0 | common plant regulatory factor 1-like isoform X1 | ||||
Swissprot | Q99089 | 1e-148 | CPRF1_PETCR; Common plant regulatory factor 1 | ||||
TrEMBL | I1JRW9 | 0.0 | I1JRW9_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA03G41590.5 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46270.1 | 1e-100 | G-box binding factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.03G255000.5.p |
Publications ? help Back to Top | |||
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