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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.03G094700.1.p | ||||||||
Common Name | GLYMA_03G094700, LOC100815537 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 284aa MW: 32339.2 Da PI: 5.0037 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.2 | 2.6e-20 | 111 | 161 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 +++GVr+++ +grW+AeIrdp+ r +r++lg+f+taeeAa +++a+ k++g+ Glyma.03G094700.1.p 111 KFRGVRQRP-WGRWAAEIRDPT----RrTRVWLGTFDTAEEAAMVYDKAAIKFRGA 161 89*******.**********84....34*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 9.8E-37 | 111 | 174 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.802 | 111 | 168 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.6E-35 | 111 | 167 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.0E-30 | 111 | 168 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.6E-13 | 111 | 160 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-22 | 111 | 167 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 7.0E-11 | 112 | 123 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.0E-11 | 134 | 150 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MEYQRKTIIT KLVKSSKFLP KVIRISVTDQ DATDSSSDEE GEHARVKKVI NEIKIVCVNN 60 KKNHKNHDND SSCCYANATK ENESLRPQQQ NINPLNKVGY MNQNQNLKQH KFRGVRQRPW 120 GRWAAEIRDP TRRTRVWLGT FDTAEEAAMV YDKAAIKFRG AEAVTNFIKP RLKDHESVSL 180 ECDSVVNGTS SACASPTSVL VFQPWIEPPL LEETFKEEEV FNGLTTDVYC DDGFLFSNEA 240 LCDQPLPTTF CNVDCIDIPL DEDLESCKWD VDNYFSDDAS WKQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-22 | 108 | 167 | 2 | 62 | ATERF1 |
3gcc_A | 2e-22 | 108 | 167 | 2 | 62 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.03G094700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003520362.1 | 0.0 | pathogenesis-related genes transcriptional activator PTI6 | ||||
Refseq | XP_028224889.1 | 0.0 | pathogenesis-related genes transcriptional activator PTI6-like | ||||
TrEMBL | A0A0B2QBK9 | 0.0 | A0A0B2QBK9_GLYSO; Ethylene-responsive transcription factor CRF4 | ||||
TrEMBL | K7KE10 | 0.0 | K7KE10_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA03G23330.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF450 | 34 | 161 |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 4e-35 | cytokinin response factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.03G094700.1.p |
Entrez Gene | 100815537 |