PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G293400.1.p
Common NameGLYMA_02G293400
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 421aa    MW: 46036.5 Da    PI: 6.0187
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G293400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.51.9e-30231289259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           Dg++WrKYGqK+ kg++ pr+YYrCt++ gCpv+k+v+r+aed +v+++tYeg+Hnh+
  Glyma.02G293400.1.p 231 ADGCQWRKYGQKMAKGNPWPRAYYRCTMStGCPVRKQVQRCAEDRSVLITTYEGQHNHP 289
                          7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-32215291IPR003657WRKY domain
PROSITE profilePS5081129.872225291IPR003657WRKY domain
SuperFamilySSF1182902.22E-27227291IPR003657WRKY domain
SMARTSM007745.0E-37230290IPR003657WRKY domain
PfamPF031061.6E-26232289IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MEPTWNDAIV NVSNSSDPIM SFRGTPLVMD ELDFFAQKRK VSANDDDHQR VEDLHVDTSL  60
DLLTKNDTDV NNRSTEEDAA LETMDDKSNE VNNNCNTLRM QLVKLTQKHH SHGNNGVIGE  120
KEDMVPRSFL DIGVAEKDEP NSQQSSEGKL RESKSMVELG HGKDIAVLEA YKLDSTAGRE  180
STKARMEGRQ ISTEQEFSNK VPRLDPASET MSMIKKARVS VRAKSYSSMI ADGCQWRKYG  240
QKMAKGNPWP RAYYRCTMST GCPVRKQVQR CAEDRSVLIT TYEGQHNHPL PPTTSVAASM  300
PSILESASLP CSRNMATLSA SAPFPTITLD LTQNATNSSQ LQRELPLGQL GLLSPLLAHK  360
FMSVPKIFGQ GMDTNSSFAN ILNAATADPN FTAALVAAIT SVMGTSHSNT NATNSTSGDE  420
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-24217292175WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G293400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028185357.10.0probable WRKY transcription factor 31
TrEMBLA0A0R0LA200.0A0A0R0LA20_SOYBN; Uncharacterized protein
STRINGGLYMA02G46280.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF139131222
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.19e-75WRKY family protein