PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G085900.2.p
Common NameGLYMA_02G085900, LOC100817125
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARR-B
Protein Properties Length: 607aa    MW: 66955.4 Da    PI: 6.8238
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G085900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like894.4e-28171224155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          kpr++W+ eLH++Fv+av+qL G +kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl
  Glyma.02G085900.2.p 171 KPRVVWSVELHQQFVSAVNQL-GLDKAVPKRILELMNVPGLTRENVASHLQKFRL 224
                          79*******************.********************************8 PP
2Response_reg59.91.3e-20109723109
                          CEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
         Response_reg  23 yeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                           ++v+++++++ al+ll+e++  +D++l D+ mp+mdG++ll++   e  +lp+i++++ ++ + + + ++ Ga d+l Kp+ +eel++
  Glyma.02G085900.2.p  10 WQKVTTCTEATVALNLLRERKgcFDVVLSDVHMPDMDGYKLLEHVGLEM-DLPVIMMSGDSTTSAVMKGIRHGACDYLIKPVREEELRN 97 
                          469******************************************6644.8************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004481.9E-12199IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.53E-201102No hitNo description
PROSITE profilePS5011034.21103IPR001789Signal transduction response regulator, receiver domain
PIRSFPIRSF0363922.2E-1342587IPR017053Response regulator B-type, plant
SuperFamilySSF521721.29E-255108IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23005.0E-3010121No hitNo description
PfamPF000724.9E-171098IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5129410.504168227IPR017930Myb domain
SuperFamilySSF466891.52E-19168228IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.5E-30168229IPR009057Homeodomain-like
TIGRFAMsTIGR015572.7E-24171224IPR006447Myb domain, plants
PfamPF002492.3E-7173222IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    Send to blast
MIFLLSQLLW QKVTTCTEAT VALNLLRERK GCFDVVLSDV HMPDMDGYKL LEHVGLEMDL  60
PVIMMSGDST TSAVMKGIRH GACDYLIKPV REEELRNIWQ HVVRKFWNDN KELDNSGSME  120
DSDRNKWGND DAEYTSSVAD AAEVVKAPKK RSSLKEEDIE LESDDPATSK KPRVVWSVEL  180
HQQFVSAVNQ LGLDKAVPKR ILELMNVPGL TRENVASHLQ KFRLYLKRLS GVAQQQNGML  240
NAIPGTIESK LGATGRFDIQ ALAAAGHVPP ETLAALHAEL LGHPATHMMS TVDQTTLLQA  300
SIQGLKHSHA EHAVAYGQPL VKCHSNIGKN FSPSILTVND TSSGYGTWPS SNNTIGLVRP  360
NSSVERVGIQ NNNMLMDILE HQQSQQHQQK QQLQQQSLIH DQSCSINVQP SCMVVPSQSS  420
DTFQAVNSPA SVNQDFSFAR NAIIDYSLLS QKSKNSFSAS QFPGGDTKAR GVLYGYSTPS  480
TCSTSSSNGN RQQLQNSTLT FGAARPLPSL LPMSDRKDPY GFKSGDLLDQ VCFRNLGFVG  540
KGTCIPSRFV ENEIESSVSD FSQMKVNVDS SGNTRNQEPN FINIPKVSHP IIERYPSRDH  600
SRVFTE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-21170230464ARR10-B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.419880.0cotyledon
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G085900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028200119.10.0two-component response regulator ORR21 isoform X2
SwissprotQ8H7S71e-132ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBLK7K7580.0K7K758_SOYBN; Two-component response regulator
STRINGGLYMA02G09451.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.12e-98response regulator 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]