PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G016100.1.p
Common NameEBP, GLYMA_02G016100
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 301aa    MW: 34092.9 Da    PI: 5.1592
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G016100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.3e-1975123355
                  AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a+++ ++k++g
  Glyma.02G016100.1.p  75 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDREARKIRG 123
                          9*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.0E-3274132IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-2274132IPR016177DNA-binding domain
SMARTSM003803.1E-3874137IPR001471AP2/ERF domain
PROSITE profilePS5103223.77574131IPR001471AP2/ERF domain
PRINTSPR003677.7E-127586IPR001471AP2/ERF domain
CDDcd000187.24E-3375132No hitNo description
PfamPF008476.1E-1275123IPR001471AP2/ERF domain
PRINTSPR003677.7E-1297113IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MCGGAIIADF IPRRGGRRLT ASELWPNSFA KDDDFDLDYS HIATQQPSTL KRSQPPKVSE  60
QVENKPVKRQ RKNLYRGIRQ RPWGKWAAEI RDPRKGVRVW LGTFNTAEEA ARAYDREARK  120
IRGKKAKVNF PNEDDEYSIQ ARNPIPPLPF APQHPPLYQQ QYRCDLNNAP KNLNFEFGYD  180
LNHAEAFPSR VDAVNADSVV VSVDENSGSA SGSEGAYSTT EFMGSVQNGN GYLGGTVMEK  240
KEKETEVIEA EEEKNKVLEL SEELMAYENY MKFYQIPYYD GQSTTNNVQE SLVGDLWSFD  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-21751331574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.235480.0hypocotyl| pod| root| seed coat| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G016100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM1348010.0HM134801.1 Glycine max ERF protein (EBP) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001241423.10.0uncharacterized protein LOC100819416
RefseqXP_028193163.10.0ethylene-responsive transcription factor ERF073-like
TrEMBLA0A445LI950.0A0A445LI95_GLYSO; Ethylene-responsive transcription factor RAP2-3
TrEMBLD9ICY50.0D9ICY5_SOYBN; ERF protein
STRINGGLYMA02G01960.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67713449
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.15e-37ethylene-responsive element binding protein