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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.01G195900.2.p | ||||||||
Common Name | GLYMA_01G195900, LOC100812275 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | AP2 | ||||||||
Protein Properties | Length: 613aa MW: 69054 Da PI: 7.4122 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.6 | 4.8e-16 | 274 | 333 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng...krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g k ++++lg ++ +e+Aa+a++ a++k++g Glyma.01G195900.2.p 274 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqgrKGRQVYLGGYDMEEKAARAYDMAALKYWG 333 78*******************988885566555*************************98 PP | |||||||
2 | AP2 | 45.8 | 1.5e-14 | 378 | 427 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Glyma.01G195900.2.p 378 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 427 9***************988532...5************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.6E-12 | 274 | 333 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.17E-21 | 274 | 341 | No hit | No description |
SuperFamily | SSF54171 | 1.83E-16 | 274 | 343 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.2E-16 | 275 | 342 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.243 | 275 | 341 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.7E-28 | 275 | 347 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.5E-6 | 276 | 287 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.96E-17 | 376 | 436 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.09E-24 | 376 | 437 | No hit | No description |
PROSITE profile | PS51032 | 19.177 | 377 | 435 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.8E-18 | 377 | 435 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-33 | 377 | 441 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.6E-9 | 378 | 427 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.5E-6 | 417 | 437 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 613 aa Download sequence Send to blast |
MKPIENGNTV SINYQNSWLG FSLSPQMNIG VPSHLHQTQP SSAAVEAVPP NFYHHTPLHN 60 YGLYYELEGE HVGMSSSLPI MPLKSNASLS GIEALSRSQA QATTTISAMH SSLNSMLINE 120 LLCHGLNNPN NLNHVQEDIS QQQFSYYSTL RNQDVILEGS KHQLPCIAED ENPGLKSWFS 180 RDFHARHAEE SRMIVPLECN GGESGSIGSI TYGDLHSSNL SVSPTSGSSS VTSSPALTNT 240 VATNTKKRWL EMVDQNQKQI VHRKSIDTFG QRTSQYRGVT RHRWTGRYEA HLWDNSCKKE 300 GQGRKGRQVY LGGYDMEEKA ARAYDMAALK YWGPSSHINF PLENYQNELE EMKNMTRQEY 360 VAHLRRKSSG FSRGASMYRG VTRHHQHGRW QARIGRVAGN KDLYLGTFST QEEAAEAYDI 420 AAIKFRGVNA VTNFDITRYD VEKIMESNNL LSSEQAKRKR EMDDGTRSEA TVNQKPSTYD 480 HTQETILMQK RCKNQSEWKM VQFPCPQQLD QNQRIESCRT QPFSTDLDNM FRHQVEERSN 540 MGTHLSNPSS LVTSLSSSRE ESPDKTSMPM LFGMPSTVSK LLANVDSWDL SSNLRTALSM 600 PQMPIFAAWT DA* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.7488 | 0.0 | epicotyl |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed at the base of the stem. Expressed in stems. Expressed a low levels in crown roots and seeds (PubMed:21807632). Expressed in the stem region where adventitious (crown) root initiation occurs (PubMed:21481033). {ECO:0000269|PubMed:21481033, ECO:0000269|PubMed:21807632}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.01G195900.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006573675.1 | 0.0 | AP2-like ethylene-responsive transcription factor ANT isoform X3 | ||||
Refseq | XP_028244835.1 | 0.0 | AP2-like ethylene-responsive transcription factor ANT isoform X2 | ||||
Swissprot | Q84Z02 | 1e-139 | CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5 | ||||
TrEMBL | A0A445M5T1 | 0.0 | A0A445M5T1_GLYSO; AP2-like ethylene-responsive transcription factor CRL5 isoform B | ||||
TrEMBL | K7K4R7 | 0.0 | K7K4R7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA01G40380.2 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-128 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.01G195900.2.p |
Entrez Gene | 100812275 |
Publications ? help Back to Top | |||
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