PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G177400.6.p
Common NameGLYMA_01G177400
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bZIP
Protein Properties Length: 349aa    MW: 37211.9 Da    PI: 5.5364
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G177400.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_169.94e-22266328163
                          XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                          ++elk+++rkq+NRe+ArrsR+RK+ae+eeL+++v++L +eN+ L++el++ ++e++kl+se+
  Glyma.01G177400.6.p 266 DRELKKQKRKQSNRESARRSRLRKQAECEELQKRVESLRSENRILREELQRVSEECKKLTSEN 328
                          689**********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077773.4E-32193IPR012900G-box binding protein, multifunctional mosaic region
Gene3DG3DSA:1.20.5.1701.4E-17261325No hitNo description
SMARTSM003381.1E-19266330IPR004827Basic-leucine zipper domain
PfamPF001701.2E-18267328IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.978268331IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.46E-10269325No hitNo description
CDDcd147021.18E-23271321No hitNo description
PROSITE patternPS000360273288IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MGTDEESTAK VSKPSSTSST KIPLAPSYPD WSSSVQAYYA PGVTPRAFFA STVASPTPHP  60
YLWGSQPLIP PYGTPVPYPA IYPPGNVYAH PSMATTPSTT QNGTELLGKE SDGKDRVSAK  120
SSKGVSTNSG SKAGDNGKAG SGSGNDGVSQ SAESGSEGSS DASDENTDQQ ESATNKKGSF  180
DQMLVDGANA RKNSVSTIPH SSVPGNPAVS MSPTSLNIGM DLWDASPAGA EAAKMRHNQS  240
SASEAVTPPT IMGREVPLGE QWIQDDRELK KQKRKQSNRE SARRSRLRKQ AECEELQKRV  300
ESLRSENRIL REELQRVSEE CKKLTSENDS IKEELERMCG SEAIANLE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1282288RRSRLRK
2282289RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.447690.0hypocotyl
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Found in both light and dark grown leaves.
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:1373374, ECO:0000269|PubMed:22718771}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G177400.6.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankSOYGBFA0.0L01447.1 Glycine max G-box binding factor (GBF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006573592.10.0G-box-binding factor 1 isoform X2
SwissprotP427742e-98GBF1_ARATH; G-box-binding factor 1
TrEMBLK7K4G80.0K7K4G8_SOYBN; Uncharacterized protein
STRINGGLYMA01G38381.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.13e-92G-box binding factor 1
Publications ? help Back to Top
  1. Gangappa SN,Srivastava AK,Maurya JP,Ram H,Chattopadhyay S
    Z-box binding transcription factors (ZBFs): a new class of transcription factors in Arabidopsis seedling development.
    Mol Plant, 2013. 6(6): p. 1758-68
    [PMID:24157607]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Karumuri S,Bandopadhyay R
    In silico analysis of the structure and interaction of COP1 protein of Arabidopsis thaliana.
    Indian J. Biochem. Biophys., 2014. 51(5): p. 343-9
    [PMID:25630103]
  4. Smykowski A,Zimmermann P,Zentgraf U
    CORRECTION. G-Box Binding Factor1 Reduces CATALASE2 Expression and Regulates the Onset of Leaf Senescence in Arabidopsis.
    Plant Physiol., 2016. 170(2): p. 1164-7
    [PMID:26826725]
  5. Smykowski A,Fischer SM,Zentgraf U
    Phosphorylation Affects DNA-Binding of the Senescence-Regulating bZIP Transcription Factor GBF1.
    Plants (Basel), 2015. 4(3): p. 691-709
    [PMID:27135347]
  6. Giri MK, et al.
    GBF1 differentially regulates CAT2 and PAD4 transcription to promote pathogen defense in Arabidopsis thaliana.
    Plant J., 2017. 91(5): p. 802-815
    [PMID:28622438]