PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D12G2135
Common NameERF11
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 320aa    MW: 35920.7 Da    PI: 6.0722
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D12G2135genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.7e-19177227255
          AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+++AeIrdp   + k  r++lg+f+ a eAaka+++a+ kl+g
  Gh_D12G2135 177 HYRGVRQRP-WGKFAAEIRDP---NrKGSRVWLGTFDAAIEAAKAYDRAAFKLRG 227
                  8********.**********9...6566*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.92E-31176235No hitNo description
Gene3DG3DSA:3.30.730.101.0E-31176236IPR001471AP2/ERF domain
PROSITE profilePS5103223.788177235IPR001471AP2/ERF domain
PfamPF008473.1E-13177227IPR001471AP2/ERF domain
SuperFamilySSF541714.05E-22177236IPR016177DNA-binding domain
SMARTSM003801.6E-36177241IPR001471AP2/ERF domain
PRINTSPR003671.4E-13178189IPR001471AP2/ERF domain
PRINTSPR003671.4E-13217237IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MESSSEVSSR LQYIEQYLLD ENQFPPVGLW SFSNENQWTN YPKSEVSTSQ SHSLYSQTST  60
SDSCLTASNF NSLDEDDFFN FSTNFPGFES NQSDVFEFDS KPQFIHLTTP KPLASDATAC  120
EFQVKSRSSS NSTPNSQSRK PSLKISLPHK VEWIQFGKPD LTEVKPKNSN TEERSKHYRG  180
VRQRPWGKFA AEIRDPNRKG SRVWLGTFDA AIEAAKAYDR AAFKLRGSKA ILNFPLEAGK  240
LDVIAADGER KRSRDDGAGD EREVKAVKRV NDDVTKARDN GDAPLTPSNW TSFLDCDNDT  300
KGLFNMPLLS PLGLHQVIVI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-29176236161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-29174236264ATERF1
3gcc_A2e-29174236264ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.87490.0boll| ovule| stem
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:9756931}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7139100.0KC713910.1 Gossypium hirsutum ethylene-responsive transcription factor 11 (ERF11) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016736926.10.0PREDICTED: ethylene-responsive transcription factor 5-like
SwissprotO803415e-62EF102_ARATH; Ethylene-responsive transcription factor 5
TrEMBLA0A1U8ND340.0A0A1U8ND34_GOSHI; ethylene-responsive transcription factor 5-like
STRINGGorai.008G232700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.11e-60ethylene responsive element binding factor 5
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]