PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D12G2134
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 329aa    MW: 36516.5 Da    PI: 6.5329
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D12G2134genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.72e-20180230255
          AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+++AeIrdp   + +  r++lg+f+ta eAaka+++a+ kl+g
  Gh_D12G2134 180 HYRGVRQRP-WGKFAAEIRDP---NrRGSRIWLGTFDTAIEAAKAYDRAAFKLRG 230
                  8********.**********9...4334*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.24E-32179238No hitNo description
Gene3DG3DSA:3.30.730.102.1E-32179239IPR001471AP2/ERF domain
SMARTSM003804.3E-37180244IPR001471AP2/ERF domain
SuperFamilySSF541716.34E-23180239IPR016177DNA-binding domain
PfamPF008472.1E-14180230IPR001471AP2/ERF domain
PROSITE profilePS5103224.223180238IPR001471AP2/ERF domain
PRINTSPR003671.5E-13181192IPR001471AP2/ERF domain
PRINTSPR003671.5E-13220240IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MESSSEVSSA LQYIEQYLLD ENQFTPAGLG SFSTANQWIN EPIPEVSTSP SQSLCSQTST  60
SGSCLTLSNF NCLDDDDFFN FSPNFPGFES NRIDVFEFDS KPQFINLTAP KPFEFTPQIT  120
ELSAVKPPTP SSSSSSSSSH NRKPSLKISL PHKVEWIQFR KPDSTKAQPT NSNSEDKNKH  180
YRGVRQRPWG KFAAEIRDPN RRGSRIWLGT FDTAIEAAKA YDRAAFKLRG SKAILNFPLE  240
AGKLDVTAVD GERKRSRDDG AGNEKQVKAG KRANDDVTKA RDNGDAPLTP SNWTSFLDWD  300
NETKGIFNMP LLSPLSPHPP LGFQQVTVI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-30177239264ATERF1
3gcc_A4e-30177239264ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.150610.0ovule| stem
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:9756931}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00549DAPTransfer from AT5G47230Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7139101e-175KC713910.1 Gossypium hirsutum ethylene-responsive transcription factor 11 (ERF11) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017636637.10.0PREDICTED: ethylene-responsive transcription factor 5-like
RefseqXP_017636653.10.0PREDICTED: ethylene-responsive transcription factor 5-like
SwissprotO803417e-72EF102_ARATH; Ethylene-responsive transcription factor 5
TrEMBLA0A2S1UF870.0A0A2S1UF87_GOSHI; Ethylene responsive element binding factor 5.1
STRINGGorai.008G232600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.14e-61ethylene responsive element binding factor 5
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]