PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D12G1684

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 436aa MW: 49329.4 Da PI: 4.6325

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D12G1684	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	104.9	1.1e-32	54	193	1	128
NAM 1 lppGfrFhPtdeelvveyLkkk.vegkk....leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.....sgyWkat 86 lp+G++F+P+d+e++++ L+k v+++k ++++ i++ +i++++P++Lp vk++ + +fF+++ k+y+tg+rk+r+++ + +W++t Gh_D12G1684 54 LPRGVKFDPSDQEIIWHLLTKVgVKDSKphpfINEFIPtIENDdGICYTHPQKLP-GVKEDGSVSHFFHRAIKAYNTGTRKRRKIHgddfgDVRWHKT 150 799**********887777634444476553333333666546******.677888899**************86555555889 PP NAM 87 gkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 g++k+v+ +g + g+kk++v+y + + k+ekt+Wvmh+y+l Gh_D12G1684 151 GRTKPVFL-DGVQEGCKKIMVLYmtTVKGGKSEKTNWVMHQYHL 193 ****.99********6545777888*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.02E-38	39	212	IPR003441	NAC domain
PROSITE profile	PS51005	30.219	54	212	IPR003441	NAC domain
Pfam	PF02365	9.5E-14	55	193	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence Send to blast
MAGTWLVDGN RIASKIRSAS DPGRVTWNSN PTRSCPNCHH IIDNSDVNQA WPGLPRGVKF 60 DPSDQEIIWH LLTKVGVKDS KPHPFINEFI PTIENDDGIC YTHPQKLPGV KEDGSVSHFF 120 HRAIKAYNTG TRKRRKIHGD DFGDVRWHKT GRTKPVFLDG VQEGCKKIMV LYMTTVKGGK 180 SEKTNWVMHQ YHLGTEEDEK DGEYVISKIF HQQQQPKQGD KTEQDLPETT DTMIVKVDPV 240 TPKSVTPDPP RTGRQCDEYD QGQEYTIPCI NPSAQVFSAK HPTTQYVEDE AQAECENSSL 300 NDLPAPENHL NEMLDNDDNN DNHAEEDSKW WDGESQFLLD SQQLVEGLSL CDEFLQSQSP 360 RRDADGNEGI LDGKPRLSDY AQLGAEHLKK DLEECQNLED DPTNIELDTP PEFRLSQLDF 420 ASQDSYTAWG VSKVID

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence Send to blast

MAGTWLVDGN RIASKIRSAS DPGRVTWNSN PTRSCPNCHH IIDNSDVNQA WPGLPRGVKF  60
DPSDQEIIWH LLTKVGVKDS KPHPFINEFI PTIENDDGIC YTHPQKLPGV KEDGSVSHFF  120
HRAIKAYNTG TRKRRKIHGD DFGDVRWHKT GRTKPVFLDG VQEGCKKIMV LYMTTVKGGK  180
SEKTNWVMHQ YHLGTEEDEK DGEYVISKIF HQQQQPKQGD KTEQDLPETT DTMIVKVDPV  240
TPKSVTPDPP RTGRQCDEYD QGQEYTIPCI NPSAQVFSAK HPTTQYVEDE AQAECENSSL  300
NDLPAPENHL NEMLDNDDNN DNHAEEDSKW WDGESQFLLD SQQLVEGLSL CDEFLQSQSP  360
RRDADGNEGI LDGKPRLSDY AQLGAEHLKK DLEECQNLED DPTNIELDTP PEFRLSQLDF  420
ASQDSYTAWG VSKVID

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in shoot and root apical meristems, in lateral root primordia, in the vasculature of young leaves and in the root stele. {ECO:0000269\|PubMed:23907539}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269\|PubMed:19549833, ECO:0000269\|PubMed:20634150, ECO:0000269\|PubMed:24399300, ECO:0000305\|PubMed:24736489}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269\|PubMed:23907539}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JQ914145	0.0	JQ914145.1 Gossypium hirsutum NAC domain protein 14 (NAC14) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012438647.1	0.0	PREDICTED: NAC domain-containing protein 8
Refseq	XP_012438648.1	0.0	PREDICTED: NAC domain-containing protein 8
Swissprot	Q6NQK2	1e-179	NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1
TrEMBL	A0A2P5QHG7	0.0	A0A2P5QHG7_GOSBA; Uncharacterized protein
STRING	Gorai.008G186300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9707	27	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25580.1	1e-171	NAC family protein

Publications ? help Back to Top
Yi D, et al. The Arabidopsis SIAMESE-RELATED cyclin-dependent kinase inhibitors SMR5 and SMR7 regulate the DNA damage checkpoint in response to reactive oxygen species. Plant Cell, 2014. 26(1): p. 296-309 [PMID:24399300] Biever JJ,Brinkman D,Gardner G UV-B inhibition of hypocotyl growth in etiolated Arabidopsis thaliana seedlings is a consequence of cell cycle arrest initiated by photodimer accumulation. J. Exp. Bot., 2014. 65(11): p. 2949-61 [PMID:24591052] Hu Z,Cools T,Kalhorzadeh P,Heyman J,De Veylder L Deficiency of the Arabidopsis helicase RTEL1 triggers a SOG1-dependent replication checkpoint in response to DNA cross-links. Plant Cell, 2015. 27(1): p. 149-61 [PMID:25595823] Chen P,Umeda M DNA double-strand breaks induce the expression of flavin-containing monooxygenase and reduce root meristem size in Arabidopsis thaliana. Genes Cells, 2015. 20(8): p. 636-46 [PMID:26033196] Sjogren CA,Bolaris SC,Larsen PB Aluminum-Dependent Terminal Differentiation of the Arabidopsis Root Tip Is Mediated through an ATR-, ALT2-, and SOG1-Regulated Transcriptional Response. Plant Cell, 2015. 27(9): p. 2501-15 [PMID:26320227] Yoshiyama KO SOG1: a master regulator of the DNA damage response in plants. Genes Genet. Syst., 2016. 90(4): p. 209-16 [PMID:26617076] Weimer AK, et al. The plant-specific CDKB1-CYCB1 complex mediates homologous recombination repair in Arabidopsis. EMBO J., 2016. 35(19): p. 2068-2086 [PMID:27497297] Davis OM,Ogita N,Inagaki S,Takahashi N,Umeda M DNA damage inhibits lateral root formation by up-regulating cytokinin biosynthesis genes in Arabidopsis thaliana. Genes Cells, 2016. 21(11): p. 1195-1208 [PMID:27658920] Pedroza-García JA, et al. Function of the Plant DNA Polymerase Epsilon in Replicative Stress Sensing, a Genetic Analysis. Plant Physiol., 2017. 173(3): p. 1735-1749 [PMID:28153919] Horvath BM, et al. Arabidopsis RETINOBLASTOMA RELATED directly regulates DNA damage responses through functions beyond cell cycle control. EMBO J., 2017. 36(9): p. 1261-1278 [PMID:28320736] Sjogren CA,Larsen PB SUV2, which encodes an ATR-related cell cycle checkpoint and putative plant ATRIP, is required for aluminium-dependent root growth inhibition in Arabidopsis. Plant Cell Environ., 2017. 40(9): p. 1849-1860 [PMID:28556304] Yoshiyama KO,Kaminoyama K,Sakamoto T,Kimura S Increased Phosphorylation of Ser-Gln Sites on SUPPRESSOR OF GAMMA RESPONSE1 Strengthens the DNA Damage Response in Arabidopsis thaliana. Plant Cell, 2017. 29(12): p. 3255-3268 [PMID:29208704] Johnson RA, et al. SUPPRESSOR OF GAMMA RESPONSE1 Links DNA Damage Response to Organ Regeneration. Plant Physiol., 2018. 176(2): p. 1665-1675 [PMID:29222192] Ogita N, et al. Identifying the target genes of SUPPRESSOR OF GAMMA RESPONSE 1, a master transcription factor controlling DNA damage response in Arabidopsis. Plant J., 2018. 94(3): p. 439-453 [PMID:29430765] Cao X, et al. Roles of MSH2 and MSH6 in cadmium-induced G2/M checkpoint arrest in Arabidopsis roots. Chemosphere, 2018. 201: p. 586-594 [PMID:29533809]