PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G1337
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 504aa    MW: 55566.8 Da    PI: 5.5731
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G1337genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.78.8e-13358404455
                  HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                  +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  Gh_D11G1337 358 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYITDLQ 404
                  799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.5E-4549234IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.831354403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.41E-19357426IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.59E-14357408No hitNo description
PfamPF000102.9E-10358404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-18358424IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.4E-14360409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MGEMFWANEE DKAKVESVLG TEACDYLILL ASKNMLSDFI SPPPSYLGLQ QKLCEVVERS  60
NWNYAIYWQV SSLKSGGSIL IWGDGHCRDL KLGGVGDASC SADAKLEGVE KINEVRKQVL  120
QKLRACFGGS EEDNYPAKLD GVSDREMFYL TSMFFKFHCD ASYGPAESYK SSKPIWSSDS  180
NCCSDHYQSR SFLARSAGLQ TVVFVPVKSG VVELGSINLI PEDQNAVETV SAMFGGSSSV  240
QAKTVPKIFG RELSLGGSKS QSISINFSPK MEDESGFMLE SYDVQALGSN QVYGNSSNGC  300
QGDSEAKLFP QLLVGGLNTQ ARISGVEHPK DDSPSLPDER KPRKRGRKPA NGREEPLNHV  360
EAERQRREKL NQRFYALRAV VPNISKMDKA SLLGDAITYI TDLQMKIRVL ETEKEMVNNG  420
QKQLSMPDID FQQRHEDAVV TMLYPLDAHP VSKVLKALKE NQITARESDV STTDNDKIVH  480
TFTIGAPGGA AEQLKEKLLD ALSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A6e-29352426276Transcription factor MYC2
5gnj_B6e-29352426276Transcription factor MYC2
5gnj_E6e-29352426276Transcription factor MYC2
5gnj_F6e-29352426276Transcription factor MYC2
5gnj_G6e-29352426276Transcription factor MYC2
5gnj_I6e-29352426276Transcription factor MYC2
5gnj_M6e-29352426276Transcription factor MYC2
5gnj_N6e-29352426276Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1339347RKPRKRGRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.188090.0boll
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00099PBMTransfer from AT4G16430Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016710067.10.0PREDICTED: transcription factor bHLH3-like
SwissprotA0A3Q7H2160.0MTB3_SOLLC; Transcription factor MTB3
TrEMBLA0A1U8L6280.0A0A1U8L628_GOSHI; transcription factor bHLH3-like
STRINGGorai.007G143800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66112741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.10.0bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]