PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G0616
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NF-YB
Protein Properties Length: 205aa    MW: 23469 Da    PI: 7.0438
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G0616genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB177.21.5e-5539134297
        NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
                  +eqdrflPianvsri+kkv+P+n+kiskdaket+qecvsefisfvt+easdkcqrekrktingdd++wa++tlGfe+yv plk+yl+kyre+egek
  Gh_D11G0616  39 KEQDRFLPIANVSRILKKVIPSNGKISKDAKETIQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEEYVGPLKLYLSKYREMEGEK 134
                  89*******************************************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.2E-5231155IPR009072Histone-fold
SuperFamilySSF471131.55E-4041176IPR009072Histone-fold
PfamPF008085.7E-2744108IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006153.9E-197290No hitNo description
PROSITE patternPS0068507591IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006153.9E-1991109No hitNo description
PRINTSPR006153.9E-19110128No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MEDEIKHGNV THVPNKGSPE SPHVACSDSN HNQNNNNNKE QDRFLPIANV SRILKKVIPS  60
NGKISKDAKE TIQECVSEFI SFVTGEASDK CQREKRKTIN GDDIIWAITT LGFEEYVGPL  120
KLYLSKYREM EGEKLIFPKQ QRSDQRRQHS EYEQNIVFNN NNNININTNS NNNVYSSINV  180
YPSFVPSDQP FSLPFSSNSF QKQLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B1e-4439129292Transcription factor HapC (Eurofung)
4g92_B1e-4439129292Transcription factor HapC (Eurofung)
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and green siliques. {ECO:0000269|PubMed:11250072}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016694717.11e-149PREDICTED: nuclear transcription factor Y subunit B-7-like
SwissprotQ9SIT92e-62NFYB7_ARATH; Nuclear transcription factor Y subunit B-7
TrEMBLA0A1U8JWR21e-147A0A1U8JWR2_GOSHI; nuclear transcription factor Y subunit B-7-like
STRINGGorai.007G066100.11e-124(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25528229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G13570.13e-61nuclear factor Y, subunit B7
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]