 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Gh_D10G0108 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
| Family |
TALE |
| Protein Properties |
Length: 353aa MW: 40125 Da PI: 6.5532 |
| Description |
TALE family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gh_D10G0108 | genome | NAU-NBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 29 | 1.8e-09 | 280 | 314 | 21 | 55 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55
k +yps++++ LA+++gL+++q+ +WF N+R ++
Gh_D10G0108 280 KWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 314
569*****************************885 PP
|
| 2 | ELK | 33.8 | 7.6e-12 | 234 | 255 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22
ELK+ Ll+ YsgyL sLkqEF+
Gh_D10G0108 234 ELKDKLLQRYSGYLFSLKQEFM 255
9********************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 353 aa
Download sequence Send
to blast |
MEGGSNSTSC MLAFGHNNNT CNGPCHVSMM PSMSSHHHHH HHMDSNNPLF LPLPPTNNQD 60
PNHNSTSGSP SMILNNTGCY FMENNNNDDD GSSSSSMKAK IMSHPHYHRL LAAYVNCQKV 120
GAPPEVVARL EEACATAATV GGTSSTSYMG EDPALDQFME AYCEMLIKYE QELSKPFKEA 180
MVFLQRIECQ FKALTVSSSN SAYGTETFER NGSSEEETDV NNKSFIDPLA EDRELKDKLL 240
QRYSGYLFSL KQEFMKKRKK GKLPKEARQQ LLDWWSRHYK WPYPSESQKL ALAESTGLDQ 300
KQINNWFINQ RKRHWKPSED MQFVVMDGTH NPHYFMDNVI GNPFPMDLSP TFL
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 249 | 258 | LKQEFMKKRK |
| 2 | 255 | 259 | KKRKK |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: First expressed in the embryo proliferation stage, increases during early somatic embryo development and decreases thereafter. |
| Uniprot | TISSUE SPECIFICITY: Expressed mainly in embryonic tissues. Weakly detected in stems and hypocotyl. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Possible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'. |
