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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D08G0579 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C2H2 | ||||||||
Protein Properties | Length: 338aa MW: 37433.2 Da PI: 7.7194 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.1 | 0.0013 | 177 | 196 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ C k+F+r nL+ H+ Gh_D08G0579 177 FSCHVCCKTFNRYNNLQMHM 196 89*****************9 PP | |||||||
2 | zf-C2H2 | 14.9 | 7.8e-05 | 261 | 283 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C+k F k + ++H +++ Gh_D08G0579 261 FTCRKCDKAFAVKGDWRTHEKNC 283 89*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.85E-5 | 170 | 199 | No hit | No description |
PROSITE profile | PS50157 | 10.055 | 177 | 204 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.7E-4 | 177 | 196 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 179 | 199 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.08E-6 | 245 | 281 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.7E-5 | 248 | 281 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MTDPYSNLFP GGGFNFVPLN PHYATRFSTT APPPPHPTHS SQPHTNNNII FNTYSNIEAQ 60 TPHPWPAPPQ QALPLINYLS PTRQEENEPS SSSMEGDKGM NKEAAAAAAA DEEAETVTLH 120 IGLPIPISDL GFGGLSPSAH VTDRLGGNGS AVPGYPLTKG QYWIPTPTQI LVGPTQFSCH 180 VCCKTFNRYN NLQMHMWGHG SQYRKGPDSL RGSQPTAMLR LPCYCCAPGC KHNIEHPRAR 240 PLKDFRTLQT HYKRKHGVKP FTCRKCDKAF AVKGDWRTHE KNCGKIWYCI CGSDFKHKRS 300 LKDHIKAFGP GHAAVGIDCL DEDEEPGSEF ELEYESPI |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.26178 | 1e-135 | boll |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in developing carpels (PubMed:17600712). Expressed in the shoot apical meristem and the replum (PubMed:25039392). {ECO:0000269|PubMed:17600712}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX615339 | 0.0 | JX615339.1 Gossypium hirsutum clone NBRI_GE59271 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016700311.1 | 0.0 | PREDICTED: zinc finger protein WIP2-like | ||||
Swissprot | Q9SVY1 | 1e-113 | ZWIP2_ARATH; Zinc finger protein WIP2 | ||||
TrEMBL | A0A1U8KCT1 | 0.0 | A0A1U8KCT1_GOSHI; zinc finger protein WIP2-like | ||||
STRING | Gorai.004G065400.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM239 | 28 | 237 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57670.1 | 1e-114 | C2H2 family protein |
Publications ? help Back to Top | |||
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